Locus 2770

Sequence ID 3R_DroMel_CAF1
Location 7,420,674 – 7,420,769
Length 95
Max. P 0.809555
window4494

overview

Window 4

Location 7,420,674 – 7,420,769
Length 95
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 83.57
Mean single sequence MFE -32.70
Consensus MFE -24.84
Energy contribution -25.40
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.76
SVM decision value 0.64
SVM RNA-class probability 0.809555
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7420674 95 + 27905053
GCUCUCUUGGCCAUUUGCGAUU-----------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUCAGUGGGCUAAAAUAU
((((.((.((((........((-----------------------((.(((.....)))))))(((((((......)))))))............))))....)).))))........ ( -31.40)
>DroSim_CAF1 2622 95 + 1
GCUCUCUUGGCCAUUUGCGAUU-----------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUCAAUGGGCUAAAAGAU
((((....((((........((-----------------------((.(((.....)))))))(((((((......)))))))............)))).......))))........ ( -29.60)
>DroEre_CAF1 3746 88 + 1
GCUCUCUUGGCCAUU------------------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCAGGGCGUCAAUCAAAUCAGCGGGCUUUCAGUGGGCUAAAAGAU
..(((.(((((((((------------------------------(..(((...((.(((.(((((((((......)))))))..))....))).)))))..)))).)))))).))). ( -30.60)
>DroYak_CAF1 3842 118 + 1
GCUCUCUUGGCCAUUUGCUAUUGCCAUGGCUAUUGCUAUUGCUAGGCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGGCUUUCAGUGGGCUAAAAGAU
..(((.((((((....(((...((.(((((....))))).))..)))........(((((...(((((((......))))))).........((....))..))))))))))).))). ( -39.20)
>consensus
GCUCUCUUGGCCAUUUGCGAUU_______________________GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUCAGUGGGCUAAAAGAU
((((.((.((((.................................((.(((.....)))))..((((((((....))))))))............))))....)).))))........ (-24.84 = -25.40 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:23 2006