Locus 2769

Sequence ID 3R_DroMel_CAF1
Location 7,420,018 – 7,420,119
Length 101
Max. P 0.990065
window4493

overview

Window 3

Location 7,420,018 – 7,420,119
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 93.17
Mean single sequence MFE -33.80
Consensus MFE -28.02
Energy contribution -28.30
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -2.29
Structure conservation index 0.83
SVM decision value 2.19
SVM RNA-class probability 0.990065
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7420018 101 - 27905053
UUUAGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUGCCCGCAGAGUUGUGGCACCAUUUGUGCCUUACACCACCGUCCGGCACUGUAGCU
.........((((((.((((.((((............(((((..(((....))).)))))(((((.....)))))..........)))))))).)))))). ( -34.10)
>DroSec_CAF1 3041 101 - 1
UUUAGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCCGCAGUGUUGUGGCACCAUUUGGGCCUUACACCACCGUCCGGCACUGUAGCU
.........((((((.((((.((((................((......))..((((...(((.((....)))))..))))....)))))))).)))))). ( -32.10)
>DroSim_CAF1 1930 101 - 1
UUUAUUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCUGCAGAGUUGUGGCACCAUUUGGGCCUUACACCACCGUCCGGCACUGUAGCU
.........((((((.((((.((((............(((((.............)))))(((.((....)))))..........)))))))).)))))). ( -31.32)
>DroEre_CAF1 3121 101 - 1
CUUGGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCCGCAGAGCUGUGGCACCACUUGGGCCUUACAGCUCCGUCCGGCACUGUAGCC
.........((((((.((((.((((................((......))..((((((((((.((....)))))..))))))).)))))))).)))))). ( -37.80)
>DroYak_CAF1 3245 101 - 1
CUCAGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCCGCAGCGUUGUGGCAUCGUUUGGGCCUUACAGCUCCGUCCGGCACUGUAGCU
.........((((((.((((.((((..............((((((...((((......)))).)))))).((((......)).)))))))))).)))))). ( -33.70)
>consensus
UUUAGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCCGCAGAGUUGUGGCACCAUUUGGGCCUUACACCACCGUCCGGCACUGUAGCU
.........((((((.((((.((((............(((((.............)))))(((.((....)))))..........)))))))).)))))). (-28.02 = -28.30 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:22 2006