| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,404,255 – 7,404,375 |
| Length | 120 |
| Max. P | 0.921436 |
| Location | 7,404,255 – 7,404,375 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.42 |
| Mean single sequence MFE | -42.97 |
| Consensus MFE | -37.55 |
| Energy contribution | -37.55 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7404255 120 - 27905053 UAUCGACUAGUGGGUAAAGUACAAGUCCUGAUGGAGCUGUGGAAAUCUAAGGUGGUGCUGGUGCACCUCCUGCUGCUGAUUUGCAUAAUGCGCAUCUUUUAUCAGUCCGGACCACUGUCG ...((((.((((((((...)))..(..(((((((((.((((.(......(((.(((((....))))).)))..(((......)))...).))))..)))))))))..)...))))))))) ( -40.80) >DroSec_CAF1 20505 120 - 1 UAUCGACUAGUGGGAAAAGUACACGUCCUGAUGGAGCUGUGGAAAUCUAAGGUGGUGCUGGUGCACUUCCUGCUGCUGAUGUGCCUAAUGCGCAUCUUUUAUCAGUCCGGACCACUGACG .......((((((..........((..((((((((((.((((....)).(((.(((((....))))).))))).)).(((((((.....))))))).))))))))..))..))))))... ( -39.40) >DroEre_CAF1 20052 120 - 1 UAUCGACUAGUGGGAAAAAUACUAAUCCUGAUGGAGCUGUGGAAAUCUAAGGUGGUGCUGGUGCACCUCCUGCUGCUGGUGUGCCUGCUGCGCAUCUAUUAUCAGUCCGGACCACUGGUU ....(((((((((............(((.(((.((...(((((......(((.(((((....))))).)))((.((.((....)).)).))...)))))..)).))).)))))))))))) ( -43.10) >DroYak_CAF1 23865 120 - 1 UAUCGACUAGUGGGUAAAGUACUAAUCCUGAUGGAGCUGUGGAAAUCCAAGGUGGUGCUGUUGCACCUCCUGCUUCUGAUGUGCCUGCUGCGCAUCUACUAUCAGGCCGGACCACUGGCU ....(.((((((((((...)))....(((((((((((..(((....)))(((.(((((....))))).))))))...(((((((.....)))))))..)))))))).....)))))))). ( -48.60) >consensus UAUCGACUAGUGGGAAAAGUACAAAUCCUGAUGGAGCUGUGGAAAUCUAAGGUGGUGCUGGUGCACCUCCUGCUGCUGAUGUGCCUAAUGCGCAUCUAUUAUCAGUCCGGACCACUGGCG ......((((((((.......).....((((((((((..(((....)))(((.(((((....))))).))))))...(((((((.....)))))))..)))))))......))))))).. (-37.55 = -37.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:19 2006