Locus 2765

Sequence ID	3R_DroMel_CAF1
Location	7,387,287 – 7,387,378
Length	91
Max. P	0.700357

overview

Window 8

Location	7,387,287 – 7,387,378
Length	91
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	77.54
Mean single sequence MFE	-21.76
Consensus MFE	-8.40
Energy contribution	-7.44
Covariance contribution	-0.96
Combinations/Pair	1.50
Mean z-score	-1.98
Structure conservation index	0.39
SVM decision value	0.35
SVM RNA-class probability	0.700357
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7387287 91 + 27905053
UUGGCUGG--AAUGGCUCCAGCGGGCUCCAAUUUAAAGUUAGUAAUCAAUGCCAUUAUCAUAGGUAACUUCCCAUUGUAUCGUUGACUCUCUU
...(((((--(.....))))))..............((((((..(((((((...((((.....)))).....))))).))..))))))..... ( -18.70)
>DroSec_CAF1 3135 93 + 1
UCGAAGAGCAGAUGGCUCCACUAGGCUCCAAUUUAAAAGUAGUAAUCAAUGCCAUUAUCAUAGGUAACUUCAUAUGGUAUCAUUGACUCUCUU
...(((((.((.(((..((....))..)))...............((((((....(((((((((.....)).))))))).))))))))))))) ( -18.80)
>DroSim_CAF1 3927 93 + 1
UUGAAGAGCAGAUGGCUCCACUUGGCUCCCAUUUAAAGGUAGUAAUCAAUGCCAUUAUCAUAGGUAACUUCUUAUGGUAUCAUUGACUCUCUU
...(((((.(((((((........(((.((.......)).))).......)))))(((((((((......))))))))).......))))))) ( -22.86)
>DroEre_CAF1 3213 79 + 1
UUGAAGAGCAUAUGGCUCC----------AAUUUAAUGGUAUU-AUCAGUGCUAUUAUCAUAGGUAAUUUC-CAUGAUGCCA--AGCUCUCUU
....(((((...((((...----------....(((((((((.-....)))))))))((((.((......)-))))).))))--.)))))... ( -22.20)
>DroYak_CAF1 4422 89 + 1
UUGAAGAGCAGAUGGCUCCAG-AGACUCCAUUUUAAUGGUAGUAAUCAGUGCUAUUAUCAUAGGUACUUUC-CAUUGUGCCA--AGCUCUCUU
....(((((.((((((.....-..(((((((....)))).))).......))))))......(((((....-....))))).--.)))))... ( -26.24)
>consensus
UUGAAGAGCAGAUGGCUCCAC_AGGCUCCAAUUUAAAGGUAGUAAUCAAUGCCAUUAUCAUAGGUAACUUC_CAUGGUAUCAUUGACUCUCUU
...(((((..((((((..................................))))))......((((.(........))))).......))))) ( -8.40 =  -7.44 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:17 2006