| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,382,738 – 7,382,834 |
| Length | 96 |
| Max. P | 0.710377 |
| Location | 7,382,738 – 7,382,834 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.22 |
| Mean single sequence MFE | -29.85 |
| Consensus MFE | -10.73 |
| Energy contribution | -12.47 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7382738 96 - 27905053 AAAAGUGCCAAUUG-CCCCGAAUCCAUGGCGUAUACUUAACGUGGGCGGUUUCAGCCACUGGAUGGAUGUAUGAAGAAUGGGGGGUGGU-UUGAAAUU-- .......(.(((..-((((....((((..((((((((...((..(((.......)))..))...)).))))))....))))))))..))-).).....-- ( -26.50) >DroSec_CAF1 58258 83 - 1 AAAAGUGCCAAUUG-CCCCGAAUCCAUGGCGUAUACUUAACGUGGGCGG--------------UGGAUGUAUGGAGGAUGGG-GGUGGU-AUGGUAUUUG ..((((((((((..-((((..((((((.((.(((.......))).)).)--------------))))).(((.....)))))-))..))-.)))))))). ( -32.40) >DroSim_CAF1 61848 83 - 1 AAAAGUGCCAAUUG-CCCCGAAUCCAUGGCGUAUACUUAACGUGGGCGG--------------UGGAUGUAUGGAGGAUGGG-GGUGGU-AUGGUAUUUG ..((((((((((..-((((..((((((.((.(((.......))).)).)--------------))))).(((.....)))))-))..))-.)))))))). ( -32.40) >DroAna_CAF1 61596 78 - 1 AAAAGUGCCAAUUGGCCCCGAAUCCACGGCGUAUACUUAACGUGGGCGGGUACACUCA-------------UGGGGAAUGGG-UGUGUUUAU-------- ......(((....)))((((...(((((............))))).))))((((((((-------------(.....)))))-)))).....-------- ( -28.10) >consensus AAAAGUGCCAAUUG_CCCCGAAUCCAUGGCGUAUACUUAACGUGGGCGG______________UGGAUGUAUGGAGAAUGGG_GGUGGU_AUGGUAUU__ ......((((......((((..((((((((.(((.......))).))(((....)))............))))))...))))...))))........... (-10.73 = -12.47 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:16 2006