Locus 2763

Sequence ID 3R_DroMel_CAF1
Location 7,380,818 – 7,380,912
Length 94
Max. P 0.699566
window4486

overview

Window 6

Location 7,380,818 – 7,380,912
Length 94
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 80.15
Mean single sequence MFE -17.40
Consensus MFE -12.60
Energy contribution -13.08
Covariance contribution 0.48
Combinations/Pair 1.29
Mean z-score -1.63
Structure conservation index 0.72
SVM decision value 0.35
SVM RNA-class probability 0.699566
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7380818 94 - 27905053
CUGUGGUGGCAAUGUGACUGCUUC---CUCUCACUCGAAUUCCGGACAACCUAGCCCCCUCUUCCACCCUUGAAAACCCCUUUCCACGCCACUGUUU
..((((((((...((((..(....---)..)))).........((....))..)))...............((((.....))))...)))))..... ( -14.30)
>DroSec_CAF1 56384 94 - 1
CUGUGGUGGCAAUGUGACUGCUUCCUCCUCUCACUCGAAUUCCGGGCAACCG---CCGCCCUUCCCCCCUUCAAAACCCCUUUCCACACCACAAUUU
.(((((((.....((((..(.......)..)))).........((((.....---..)))).........................))))))).... ( -20.50)
>DroSim_CAF1 59967 94 - 1
CUGUGGUGGCAAUGUGACUGCUUCCUCCUCUCGCACGAAUUCCGGGCAACCG---CCGCCCUUCCCCCCUUGAAAACCCCUUUCCACACCACUGUUU
..((((((((..(((((..(.......)..))))).......(((....)))---..))............((((.....))))..))))))..... ( -20.10)
>DroEre_CAF1 60832 81 - 1
CUGUGGUGGCAAUGUGCCUGCU-----CCCUCACUCAAAUUCCGAGUAACCC----------U-CCCCCCUGAAAACCCCUUUCCACACCGCAGUUU
(((((((((((.......))).-----.....((((.......)))).....----------.-......................))))))))... ( -17.60)
>DroYak_CAF1 66107 82 - 1
CUGUGGUGGCAAUGUGACUGCUCCU--CCCUCACUCAAAUUCCGAGUAACCC-------------CCCCAUGAAAACCCCUUUCCACGCCACUGUUU
..(..(((((...(((.........--.....((((.......)))).....-------------......((((.....))))))))))))..).. ( -14.50)
>consensus
CUGUGGUGGCAAUGUGACUGCUUC___CUCUCACUCGAAUUCCGGGCAACCC___CC_C_CUUCCCCCCUUGAAAACCCCUUUCCACACCACUGUUU
..(((((((((.......)))...........(((((.....))))).......................................))))))..... (-12.60 = -13.08 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:15 2006