| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,378,715 – 7,378,818 |
| Length | 103 |
| Max. P | 0.986645 |
| Location | 7,378,715 – 7,378,818 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 72.99 |
| Mean single sequence MFE | -22.07 |
| Consensus MFE | -13.40 |
| Energy contribution | -13.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.61 |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.986645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7378715 103 - 27905053 ACACA--------CAUACACACGCUACAUAGCUACGUAGUACGUAGUACGUACACACACCGACAUGCAUAUAUAUGCAGAUGUAGAUGUGGCCGUAUACAUAACGGUAACG .....--------......((((((((((.((((((.....)))))).................(((((....))))).)))))).))))(((((.......))))).... ( -28.10) >DroSim_CAF1 57856 80 - 1 ACACA--------CACACACACAC-----AGC------------------UACACUCACCGACAUGCAUAUAUAUGCAGAUGUAGAUGUGGCCGUAUACAUAACGGUAACG .....--------........(((-----(.(------------------((((.((.......(((((....)))))))))))).))))(((((.......))))).... ( -18.61) >DroYak_CAF1 63917 94 - 1 ---CCCCCGCAGACACACACACUU-----UGC---------UGUACAACGUACACUCACCGACAUGCAUAUAUAUGCAGAUGUAGAUGUGGCCGUAUACAUAACGGUAACG ---..............((((.((-----(((---------(((((...)))))..........(((((....)))))...)))))))))(((((.......))))).... ( -19.50) >consensus ACACA________CACACACACAC_____AGC__________GUA__ACGUACACUCACCGACAUGCAUAUAUAUGCAGAUGUAGAUGUGGCCGUAUACAUAACGGUAACG .........................................................((((...(((((....))))).(((((.(((....))).)))))..)))).... (-13.40 = -13.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:13 2006