Locus 2760

Sequence ID	3R_DroMel_CAF1
Location	7,375,772 – 7,375,879
Length	107
Max. P	0.901233

overview

Window 3

Location	7,375,772 – 7,375,879
Length	107
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	81.68
Mean single sequence MFE	-22.56
Consensus MFE	-14.05
Energy contribution	-13.43
Covariance contribution	-0.63
Combinations/Pair	1.32
Mean z-score	-2.31
Structure conservation index	0.62
SVM decision value	1.02
SVM RNA-class probability	0.901233
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7375772 107 - 27905053
GGAUCUCCCCAGCUUUUGGCCAUUAGUAAUUUC------UCUUGGCUUAUUGCA--CAUGUGUAAUAGCAUAGAAAUGCAGCAAAAUGCAUUUAAAAUUUAAGAUUUAAAAUGUA
((((((.....((....(((((..((......)------)..)))))(((((((--....)))))))))....(((((((......)))))))........))))))........ ( -24.60)
>DroSec_CAF1 51379 107 - 1
GAAUCUCCCCAGCUUUUAGCCAUUGGUAAUUUC------CCUUGGCUUAAUGCA--CAUAUGUAAUAGCAUAGAAAUGCAGCAAAAUGCAUUUGAAAUUUAAGAUUUAAAAUUUA
((((((.....((....(((((..((......)------)..)))))....)).--..(((((....))))).(((((((......)))))))........))))))........ ( -25.20)
>DroSim_CAF1 54938 109 - 1
GAAUCUCCCCAGCUUUCAGCCAUUGGUAAUUUC------UCUUGGCUUAAUGCACACAUAUGUAAUAGCAUAGAAAUGCAGCAAAAUGCAUUUCAAAUUUAAGAUUUAAAAUGUA
((((((.....((.((.(((((..((......)------)..))))).)).)).....(((((....)))))((((((((......)))))))).......))))))........ ( -27.00)
>DroEre_CAF1 55291 106 - 1
GAAUCUCCCCAGCUUUCAGCCAUCAGUUAUUUCCAUUUUUCUUGGUUUAACGCA--CAUAUGUAAUAAUAUGGAAACGUACCAAAAUUCAUUUAAAAUGU-------ACAUUUCA
...........((.....)).....((((...(((.......)))..))))...--(((((......)))))((((.((((.................))-------)).)))). ( -13.43)
>consensus
GAAUCUCCCCAGCUUUCAGCCAUUAGUAAUUUC______UCUUGGCUUAAUGCA__CAUAUGUAAUAGCAUAGAAAUGCAGCAAAAUGCAUUUAAAAUUUAAGAUUUAAAAUGUA
...........((....(((((....................)))))....)).....(((((....))))).(((((((......)))))))...................... (-14.05 = -13.43 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:12 2006