Locus 2757

Sequence ID	3R_DroMel_CAF1
Location	7,367,903 – 7,368,005
Length	102
Max. P	0.825354

overview

Window 9

Location	7,367,903 – 7,368,005
Length	102
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	87.20
Mean single sequence MFE	-31.03
Consensus MFE	-26.46
Energy contribution	-26.53
Covariance contribution	0.06
Combinations/Pair	1.04
Mean z-score	-1.75
Structure conservation index	0.85
SVM decision value	0.70
SVM RNA-class probability	0.825354
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7367903 102 + 27905053
CAUUCGGUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAACGAUUGGCAUUCAACAAUGCCGCAACAAUUCA-------------
......(((((((...)))))))........(((((((....)).)))))........(((((.(......)...((((((....)))))))))))......------------- ( -30.60)
>DroSec_CAF1 43714 99 + 1
CAUUCGGUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAACGAUUGGCAUUCAACAAUGCCGU---AAUUCA-------------
......(((((((...)))))))(((((((((((((((....)).)))))..........(((.((((....))))))).........))).)---))))..------------- ( -28.50)
>DroEre_CAF1 47401 111 + 1
CAUUUGGUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAACCAUUCGCAUUCAACAAUGCCGC---AAUUCAGCAAUCAA-GCCG
..(((((((((....((((((((..((..(.(((((((....)).))))).)..))..))))).............(((((....))))).))---).....))))))))-)... ( -31.30)
>DroYak_CAF1 48895 115 + 1
CAUUUGAUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAGCCAUUGGCAUUCAACAAUGCCGCAACAAUUCAGCAAUCGACAACG
...((((((((((..((.(((((..((..(.(((((((....)).))))).)..))..))))).))...))....((((((....))))))...........))))))))..... ( -33.70)
>consensus
CAUUCGGUUGCGCAAUGCGCAAUAAUUAGGCGGGCCUGCUGGCAUGGCUCAUUCAACAGUUGCACAAUAACCAUUGGCAUUCAACAAUGCCGC___AAUUCA_____________
......(((((((...))))))).....((((((((((....)).)))))..........(((.((((....))))))).........)))........................ (-26.46 = -26.53 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:08 2006