Locus 2755

Sequence ID 3R_DroMel_CAF1
Location 7,365,244 – 7,365,345
Length 101
Max. P 0.988386
window4476 window4477

overview

Window 6

Location 7,365,244 – 7,365,345
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.40
Mean single sequence MFE -27.22
Consensus MFE -15.31
Energy contribution -15.87
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.43
Structure conservation index 0.56
SVM decision value 1.50
SVM RNA-class probability 0.958935
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7365244 101 + 27905053
GCCUAUCAUAUCGGUUCUUGUCAUCAGUGUCAAUGGGCUUAAUUAAAAUAGAUGUGCAAUCGACCAUUGACACAUUGACAAAUUCGAAUGAUCUUGAAUGC-------------------
....(((((.((((...((((((...((((((((((..............(((.....)))..))))))))))..))))))..))))))))).........------------------- ( -28.19)
>DroSec_CAF1 41120 101 + 1
GACUAUCAUAUCUGUUCUUGUCAUCAGUGUCAAUGGGUUUAAUUAAAAUAGACAUGCAAUCGACCAGUGACACAUUGACAAAUUCGAAUGAUCUUUAAUGC-------------------
....(((((.((.(...((((((...((((((.((((((((.......)))))...(....).))).))))))..))))))...)))))))).........------------------- ( -20.60)
>DroSim_CAF1 46650 101 + 1
GCAUAUCAUAUCUGGUAUUGUCAUCAGUGUCAAUGGGUUUAAUUAAAAUAGACAUGCAAUCGACCAUUGACACAUUGACAAAUUCGAAUGAUCUUUAAUGC-------------------
(((((((((.((..((.((((((...(((((((((((((((.......)))))...(....).))))))))))..))))))))..))))))).....))))------------------- ( -27.70)
>DroEre_CAF1 44747 118 + 1
GCUUAUCGUAUCUGUUCUCGUCAUCAGUGUCAAUGGGUUUAAUUAAAAA-GCCGUGCGAUUGU-CAAUGACACAUUGACAAAUUUGAAUGCUCUUUAAUGCAGUCUCUGCACAAAACGAC
.....((((..........................(((((.......))-)))(((((.((((-(((((...)))))))))....((.(((........))).))..)))))...)))). ( -26.20)
>DroYak_CAF1 46136 118 + 1
GCUUAUCGUAUCUGUUCUUGUCAUCAGUGUCAAUGGGUUUAAUUAAAAU-ACCGUGCAAUUGG-CACUGACACUUUGACAAAUUUGAAUGAUCUUUAAUGCAGUCUGUGCAUUAAACGAC
.....(((((((.((((((((((..(((((((...(((...........-)))((((.....)-)))))))))).))))))....)))))))..((((((((.....)))))))))))). ( -33.40)
>consensus
GCCUAUCAUAUCUGUUCUUGUCAUCAGUGUCAAUGGGUUUAAUUAAAAUAGACGUGCAAUCGACCAUUGACACAUUGACAAAUUCGAAUGAUCUUUAAUGC___________________
....(((((.((.....((((((...((((((.(((...........................))).))))))..))))))....)))))))............................ (-15.31 = -15.87 +   0.56)

alignment

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secondary structure

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dotplot

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Window 7

Location 7,365,244 – 7,365,345
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.40
Mean single sequence MFE -27.63
Consensus MFE -17.76
Energy contribution -19.08
Covariance contribution 1.32
Combinations/Pair 1.10
Mean z-score -2.60
Structure conservation index 0.64
SVM decision value 2.12
SVM RNA-class probability 0.988386
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7365244 101 - 27905053
-------------------GCAUUCAAGAUCAUUCGAAUUUGUCAAUGUGUCAAUGGUCGAUUGCACAUCUAUUUUAAUUAAGCCCAUUGACACUGAUGACAAGAACCGAUAUGAUAGGC
-------------------.........((((((((..(((((((..((((((((((.(.......................).))))))))))...)))))))...))).))))).... ( -27.00)
>DroSec_CAF1 41120 101 - 1
-------------------GCAUUAAAGAUCAUUCGAAUUUGUCAAUGUGUCACUGGUCGAUUGCAUGUCUAUUUUAAUUAAACCCAUUGACACUGAUGACAAGAACAGAUAUGAUAGUC
-------------------.........(((((((...(((((((..((((((.(((..(((((...........)))))....))).))))))...)))))))....)).))))).... ( -21.40)
>DroSim_CAF1 46650 101 - 1
-------------------GCAUUAAAGAUCAUUCGAAUUUGUCAAUGUGUCAAUGGUCGAUUGCAUGUCUAUUUUAAUUAAACCCAUUGACACUGAUGACAAUACCAGAUAUGAUAUGC
-------------------((((.....(((((((....((((((..((((((((((..(((((...........)))))....))))))))))...)))))).....)).))))))))) ( -26.00)
>DroEre_CAF1 44747 118 - 1
GUCGUUUUGUGCAGAGACUGCAUUAAAGAGCAUUCAAAUUUGUCAAUGUGUCAUUG-ACAAUCGCACGGC-UUUUUAAUUAAACCCAUUGACACUGAUGACGAGAACAGAUACGAUAAGC
((((((((((((((...))))((((((((((........(((((((((...)))))-)))).......))-))))))))......((((......))))......))))).))))).... ( -30.36)
>DroYak_CAF1 46136 118 - 1
GUCGUUUAAUGCACAGACUGCAUUAAAGAUCAUUCAAAUUUGUCAAAGUGUCAGUG-CCAAUUGCACGGU-AUUUUAAUUAAACCCAUUGACACUGAUGACAAGAACAGAUACGAUAAGC
(((((((((((((.....))))))))............(((((((.((((((((((-(.....))))(((-...........)))...)))))))..))))))).......))))).... ( -33.40)
>consensus
___________________GCAUUAAAGAUCAUUCGAAUUUGUCAAUGUGUCAAUGGUCGAUUGCACGUCUAUUUUAAUUAAACCCAUUGACACUGAUGACAAGAACAGAUAUGAUAAGC
............................(((((((...(((((((..((((((((((..(((((...........)))))....))))))))))...)))))))....)).))))).... (-17.76 = -19.08 +   1.32)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:06 2006