Locus 2754

Sequence ID 3R_DroMel_CAF1
Location 7,364,560 – 7,364,665
Length 105
Max. P 0.734195
window4475

overview

Window 5

Location 7,364,560 – 7,364,665
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 84.99
Mean single sequence MFE -37.94
Consensus MFE -24.07
Energy contribution -25.23
Covariance contribution 1.16
Combinations/Pair 1.15
Mean z-score -2.27
Structure conservation index 0.63
SVM decision value 0.43
SVM RNA-class probability 0.734195
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7364560 105 - 27905053
AAAAGAUUACGCCAUAAAGUUGGCGGUUGGACCCGACAGACCCACCAUUGUGGUGGUGGUGGCUACACCCAUACCCGAAUGUCUGUGGGUUGAAUGCGCUUCAUG
.........(((((......)))))(((.(((((.(((((((((((.....))))).((((....))))...........))))))))))).))).......... ( -40.80)
>DroSec_CAF1 40437 100 - 1
AAAAGAUUACGCCAUAAAGUUGGCGGUUGGACCCACCAUUGUGGCGAUGGUGGUGGUGGUGGCUACACCCAUCCCCGAAUGUCUGUGGGUUGAAUGCGCU-----
.........(((((......)))))(((.(((((((((((.(((.(((((..(((((....)))))..))))).)))))))...))))))).))).....----- ( -40.20)
>DroSim_CAF1 45967 100 - 1
AAAAGAUUACGCCAUAAAGUUGGCGGUUGGACCCACCAUUGUGGCGAUGGUGGUGGUGGUGGCUACACCCAUCCCCGAAUGUCUGUGGGUUGAAUGCGCU-----
.........(((((......)))))(((.(((((((((((.(((.(((((..(((((....)))))..))))).)))))))...))))))).))).....----- ( -40.20)
>DroEre_CAF1 44086 99 - 1
AAAAGAUUACGCCAUAAAGUUGGUGGUUGGACCC--CAGAGCCACCAUUAUGGUGGUUG---G-UCACCCAUCUCCGAAUGUCUGUGGGUUGAAUGCGCUCCAUG
.........(((((......)))))(((.(((((--((((((((((.....))))))((---(-....)))..........)))).))))).))).......... ( -32.80)
>DroYak_CAF1 45428 99 - 1
AAAAGAUUACGCCAUAAAGUUGGUGGUUGGACCC--CAGACCCGCCAUUGUGGUGGUGG---G-UCACCCAUCUCCGAAUGUCUGUGGGUUGAAUGCGCUCCAUG
.........(((((......)))))..((((.(.--((((((((((((....)))))))---)-))((((((............))))))....)).).)))).. ( -35.70)
>consensus
AAAAGAUUACGCCAUAAAGUUGGCGGUUGGACCC__CAGAGCCGCCAUUGUGGUGGUGGUGGCUACACCCAUCCCCGAAUGUCUGUGGGUUGAAUGCGCU_CAUG
.........(((((......)))))(((.((((((.((((........(((((..(((.......))))))))........)))))))))).))).......... (-24.07 = -25.23 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:04 2006