Locus 2753

Sequence ID	3R_DroMel_CAF1
Location	7,363,364 – 7,363,457
Length	93
Max. P	0.500000

overview

Window 4

Location	7,363,364 – 7,363,457
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	85.84
Mean single sequence MFE	-9.20
Consensus MFE	-7.24
Energy contribution	-7.20
Covariance contribution	-0.04
Combinations/Pair	1.12
Mean z-score	-1.47
Structure conservation index	0.79
SVM decision value	-0.06
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7363364 93 + 27905053
ACACCGUGAAUAUUCGCUCAGAAAAGCCACAAAAAACAAAAAAAAAAAAGGAAAACCAAACAAUUAACACAUUCGUAAUGAAAUUUUCUAUUA
.....((((....))))..((((((........................((....))............(((.....)))...)))))).... (  -6.40)
>DroSec_CAF1 39263 91 + 1
ACACCGUGAUUAUUCGUUCAAAAAAGCCACAAAAAACAAA--AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUAAAAUUUUCUAUUA
.....(((.......(((......))).............--.......((....))..........)))....................... (  -7.30)
>DroSim_CAF1 44786 87 + 1
ACACCGUG-UUAUUCGUUCAGA-AAGCCACAA--AACAAA--AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUGAAAUUUUCUAUUA
.....(((-((((((.....))-)........--......--.......((....)).......))))))....................... ( -11.90)
>DroEre_CAF1 42901 81 + 1
ACACCGUGAUUAUUCGCACAAAAAAGCCAC------------AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUGCAAUUUUCUCUUU
.....((((....))))........((...------------.......((....)).........((......))...))............ (  -9.10)
>DroYak_CAF1 44204 80 + 1
ACAGCGUGAUUAUUCGCUCAGAAAAGCCA-------------AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUGAAAUUUUCUCUUU
..((((........)))).((((((....-------------.......((....))............(((.....)))...)))))).... ( -11.30)
>consensus
ACACCGUGAUUAUUCGCUCAGAAAAGCCACAA__AACAAA__AAAAAAAGGGAAACCAAACAAUUAACACAUUCGUAAUGAAAUUUUCUAUUA
.....(((.......(((......)))......................((....))..........)))....................... ( -7.24 =  -7.20 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:03 2006