Locus 2752

Sequence ID 3R_DroMel_CAF1
Location 7,362,839 – 7,362,950
Length 111
Max. P 0.638224
window4473

overview

Window 3

Location 7,362,839 – 7,362,950
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.61
Mean single sequence MFE -31.69
Consensus MFE -10.40
Energy contribution -11.74
Covariance contribution 1.34
Combinations/Pair 1.12
Mean z-score -2.34
Structure conservation index 0.33
SVM decision value 0.22
SVM RNA-class probability 0.638224
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7362839 111 - 27905053
A---ACCAUUUAAAGUUGCUCAAUUUGCUUCGGAGCUUUGGUGCUUCGGUGCUUCGG-AGCUAAGGCAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG
.---.((((((.....(((((.....((((((((((.((((....)))).)))))))-)))...((((((.....)))))-----)...............)))))........)))))) ( -37.62)
>DroSec_CAF1 38735 103 - 1
A---ACCAUUUAAAGUUGCUCAAUUUGCUACGGAGCUUUGGUGC--------UUCGG-AGCUAAAGCAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG
.---.((((((.....(((((..........(((((((((((.(--------....)-.)))))))).)))......(((-----((.......)))))..)))))........)))))) ( -32.82)
>DroSim_CAF1 44255 111 - 1
A---ACCAUUUAAAGUUGCUCAAUUUGCUACGGAGCUUUGGUGCUUCGGUGCUUCGG-AGCUAAAGCAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG
.---...........(..(((.........((((((......))))))(((((((((-(((....)).)))......(((-----((.......))))).))))))).......)))..) ( -36.90)
>DroEre_CAF1 42414 87 - 1
A---ACCAUUUAAAGUUGUUCAAUUUGC------------------------UUCGG-AGCUAAAGCAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG
.---.((((......((((((....(((------------------------(((((-(((....)).)))......(((-----((.......))))).))))))....)))))))))) ( -25.50)
>DroYak_CAF1 43693 87 - 1
A---ACCAUUUAAAGUUGUUCAAUUUGC------------------------UUCGG-AGCUAAAGGAUCCUUCAGGUGC-----CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG
.---.((((......((((((....(((------------------------(((((-(.(.....).)))......(((-----((.......))))).))))))....)))))))))) ( -22.80)
>DroAna_CAF1 41522 101 - 1
AAAAACCAUUUAAAGUUGCUCAAUUUGCUGGAAA-C-----GGCAACGG--CAACGGCAAUGAAAGCAUCCUUCAGGUGGUAGCACAAAAAGGCUGG--AGGAGCACGGA---------G
.....((.......(((((.....((((((....-)-----)))))((.--...)))))))....((.(((((((((((....))).......))))--))))))..)).---------. ( -34.51)
>consensus
A___ACCAUUUAAAGUUGCUCAAUUUGCU_CGGA_C_____UGC________UUCGG_AGCUAAAGCAUCCUUCAGGUGC_____CACAAUUUCUGGCAAGGAGCACAAAGAACGAGUGG
.....((((((.....(((((...(((((...............................((.(((....))).))(((......))).......))))).)))))........)))))) (-10.40 = -11.74 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:02 2006