Locus 2748

Sequence ID 3R_DroMel_CAF1
Location 7,355,907 – 7,356,005
Length 98
Max. P 0.797216
window4466

overview

Window 6

Location 7,355,907 – 7,356,005
Length 98
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 72.73
Mean single sequence MFE -24.53
Consensus MFE -10.35
Energy contribution -10.91
Covariance contribution 0.56
Combinations/Pair 1.38
Mean z-score -1.98
Structure conservation index 0.42
SVM decision value 0.61
SVM RNA-class probability 0.797216
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7355907 98 + 27905053
UUCGGAACUUUUGGUUGCAUCCUGUGCGUUCUUUCCAUGCAAUUGGCUGCAGCAAUUU-CACUUGGCUUUUAUUCCCCCC------CUUAUAGGGU-CCCUCCGA-C---
.(((((.......((((((.((..(((((.......)))))...)).)))))).....-...................((------(.....))).-...)))))-.--- ( -26.00)
>DroVir_CAF1 33012 82 + 1
UUUGGCA----------CAUCCGCUGUUCGCUUUCCAUGCAAUUGGCUUAAGCAAUUUACGUUUGGUUGU-GGUCU-------------UGGCUAC-ACCCAAGCAC---
...(((.----------.....)))....((((.(((......)))...)))).......((((((.(((-(((..-------------..)))))-).))))))..--- ( -25.10)
>DroSec_CAF1 31916 102 + 1
UUCGGAACUUUCAGUUGCAUCCUGUGCGUACUUUCCACGCAAUUGGCUGCAGCAAUUU-CACUUGGCUUUUAUUACCCCCCUC--CCUUUAAGGGU-ACCCCAGC-C---
.............((((((.((..(((((.......)))))...)).)))))).....-.....((((.....(((((.....--.......))))-)....)))-)--- ( -27.00)
>DroSim_CAF1 37381 102 + 1
UUCGGAACUUUCGGUUGCAUCCUGUGCGUACUUUCCAUGCAAUUGGCUGCAGCAAUUU-CACUUGGCAUUUAUUCCCCCCCUC--CCUUUAAGGGU-ACCCCAGC-C---
...((........((((((.((..(((((.......)))))...)).)))))).....-...................((((.--......)))).-...))...-.--- ( -22.10)
>DroEre_CAF1 35711 101 + 1
UUCGGAACUUUCGGGUGCAUCCUGUGCGUACUUUCCAUGCAAUUGGCUGCAGCAAUUU-CACUUGGCUUUUACUCCCCCGCCCCUCUUUUAAGGGCC---CCCAU-----
...((.......(((((((.((..(((((.......)))))...)).))))((.....-......)).........)))((((.........)))).---.))..----- ( -24.10)
>DroYak_CAF1 36736 101 + 1
UUCGGAACUUUCGGGUGCAUCCUGUGCGUACUUUCCAUGCAAUUGGCUGCAGCAAUUU-CACUUGGCUUUUAUCCCCC-------CUCUUAAGGGCUUCCCCCCU-CCAA
...(((......(((((((.((..(((((.......)))))...)).)))).......-.....((((((((......-------....)))))))).)))...)-)).. ( -22.90)
>consensus
UUCGGAACUUUCGGUUGCAUCCUGUGCGUACUUUCCAUGCAAUUGGCUGCAGCAAUUU_CACUUGGCUUUUAUUCCCCCC_____CCUUUAAGGGC_ACCCCAGC_C___
...((........(.((((.((..(((((.......)))))...)).)))).)............(((((((.................)))))))....))........ (-10.35 = -10.91 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:56 2006