Locus 2745

Sequence ID 3R_DroMel_CAF1
Location 7,347,901 – 7,347,997
Length 96
Max. P 0.862516
window4460

overview

Window 0

Location 7,347,901 – 7,347,997
Length 96
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 83.17
Mean single sequence MFE -18.18
Consensus MFE -15.28
Energy contribution -15.62
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.84
SVM decision value 0.83
SVM RNA-class probability 0.862516
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7347901 96 + 27905053
UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCCACACAUGCACUGCAAGAAAAU-----------------------AUCCAAAGAAG
.....((((((.........((((....))))..........(((((((....)))).))).............)))))).....-----------------------........... ( -17.70)
>DroSec_CAF1 23900 96 + 1
UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCCCCAACAAAAGCCACUGUCAACAGUCGGCGCCGCACAUGCACUGCAAGAAAAU-----------------------AUCCGAAGUAG
.....((((((...............................(((((((....)))).)))...((....))..)))))).....-----------------------........... ( -19.00)
>DroSim_CAF1 29374 96 + 1
UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCCGCACAUGCACUGCAAGAAAAU-----------------------AUCGAAAAUAG
.....((((((...............................(((((((....)))).)))...((....))..)))))).....-----------------------........... ( -19.00)
>DroEre_CAF1 27780 102 + 1
UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCCGCAAAUGCACUGCAAGAAUACACGUAU-----------------AUCCAAAGUAG
.....((((((...............................(((((((....)))).)))...((....))..))))))...........-----------------........... ( -19.00)
>DroYak_CAF1 28591 96 + 1
UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCUGCAAGUGCACUGCAAGAAUGC-----------------------AUCCUAAAUAG
....(((((((.........((((....))))..........(((((((....)))).)))..)))))))....((((....)))-----------------------).......... ( -21.30)
>DroAna_CAF1 26345 117 + 1
UAUAACUUGCAUUUACAAUUGAUUUUAAAAUC-CCAACAAAAGCCACUGUCAACAGUCGCCGCCACAGAUGAACUGCAAAAAAUA-AGUUUUAACUCUGACUCUUAACUCUAAAAAUAU
........((..........((((....))))-.........((.((((....)))).)).))..((((.(((((..........-)))))....)))).................... ( -13.10)
>consensus
UAUAACUUGCAUUUACAAUUGAUUUUAAAAUCUCCAACAAAAGCCACUGUCAACAGUCGGCGCCGCACAUGCACUGCAAGAAAAU_______________________AUCCAAAAUAG
.....((((((.........((((....))))..........(((((((....)))).))).............))))))....................................... (-15.28 = -15.62 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:50 2006