Locus 2744

Sequence ID 3R_DroMel_CAF1
Location 7,345,322 – 7,345,428
Length 106
Max. P 0.724778
window4459

overview

Window 9

Location 7,345,322 – 7,345,428
Length 106
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 84.19
Mean single sequence MFE -28.86
Consensus MFE -22.70
Energy contribution -23.56
Covariance contribution 0.86
Combinations/Pair 1.06
Mean z-score -2.04
Structure conservation index 0.79
SVM decision value 0.41
SVM RNA-class probability 0.724778
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7345322 106 + 27905053
AAAACAAGUUCUGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUAUUUCCCCCCCGCC-UCACCG---------CCGUCACAGCUUGCGGCUUUCAAAGCG
................(((....((((((((((((((((..((.....(..-...)((.............)).-.....)---------).)))))))))))))))).....))). ( -30.22)
>DroSec_CAF1 21413 105 + 1
AAAACAAGUUCGGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUAUUUCCC-CCCGCC-CCACCG---------CCGUCACAGCUUGCUGCUUUCAAAGCG
................(((....(((.((((((((((((..((.....(..-...)((.........-...)).-.....)---------).)))))))))))).))).....))). ( -26.40)
>DroSim_CAF1 26840 105 + 1
AAAACAAGUUCGGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUAUUUCCC-CCCGCC-CCGCCA---------CCGUCACAGCUUGCGGCUUUCAAAGCG
................(((....((((((((((((((((..((.....(..-...)((.........-...)).-..))..---------..)))))))))))))))).....))). ( -29.90)
>DroEre_CAF1 25301 104 + 1
GAAACAAGUUCUGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUAUUUUCG-CCUUCC-UUGCC----------CCUUCACAGCUUGCGGCUUUCAAAGCG
................(((....(((((((((((((((...(((....(((-....((........)-).))).-.))).----------...))))))))))))))).....))). ( -31.40)
>DroYak_CAF1 25992 104 + 1
AAAACAAGUUCUGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA-UUUCGCCUACUUUCG-CCUUUC-CUGCC----------CCUUCACAGCUUGCGGCUUUCAAAGCG
................(((....(((((((((((((((...(((....(((-....((........)-)..)))-.))).----------...))))))))))))))).....))). ( -32.10)
>DroAna_CAF1 24353 117 + 1
GAAACAAGUUGUAUAAGCAGCUUAGCUGCAACUUGUGAUUAGCACACAAAAGUCUCACCCCUUUUCCAGCCGCAGCCACCACCACAUCCACAUCCACAGCCAGUGGCUUUCCAAGCG
...(((((((((...(((......)))))))))))).....((....(((((........)))))..((((((.((......................))..))))))......)). ( -23.15)
>consensus
AAAACAAGUUCUGUAAGCUGCUUAGCUGCAAGUUGUGAUUAGCACACAGAA_UUUCGCCUAUUUCCC_CCCGCC_CCACC__________CCGUCACAGCUUGCGGCUUUCAAAGCG
................(((....(((((((((((((((.......................................................))))))))))))))).....))). (-22.70 = -23.56 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:49 2006