| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,344,884 – 7,344,980 |
| Length | 96 |
| Max. P | 0.573519 |
| Location | 7,344,884 – 7,344,980 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 72.49 |
| Mean single sequence MFE | -17.43 |
| Consensus MFE | -10.05 |
| Energy contribution | -11.05 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7344884 96 - 27905053 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCCCACUCACACACACACAUACAC--A----CUCACACGGCGACAAUGACACCAUGACACCAAUGACA .(((((......)))))..(((.((((((((((....)))))).))))..........--.----....((.((.(.......).)).))...)))...... ( -19.10) >DroSec_CAF1 20977 92 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCGCACUCACACAC--AC--ACAC--A----CUCACACGGCGACAAUGACACCAUGACACCAAUGACA .(((((......)))))..(((.((((((((((....)))))).))))--..--....--.----....((.((.(.......).)).))...)))...... ( -17.60) >DroSim_CAF1 26420 94 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCCCACUCACACACACAC--ACAC--A----CUCACACGACGACAAUGACACCAUGACACCAAUGACA .(((((......)))))..(((.((((((((((....)))))).))))....--....--.----..............(((....)))....)))...... ( -17.20) >DroWil_CAF1 17048 74 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCAGACAGGACACAUUCGC--ACAC--A----UUCCCACG--------------------CAAUUUUCA .(((((......)))))....(((((..(((((((.((..(....)..))))--.)))--.----))..))))--------------------)........ ( -15.20) >DroYak_CAF1 25557 96 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCCCACUCACACUCACACACAC----ACGAGUUUACA--CCAACAAUGACACCCUGACACCAAUGACA .(((((......)))))...((.((((((((((....)))))..((((........----..)))).....--........))))))).............. ( -18.70) >DroAna_CAF1 23838 86 - 1 ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGUCACACACACACU---AC--AGACAAUCGACUGCGAA--AUAACAAUGAUACCA---------UGCCA .(((((......)))))...(((((((((((((((.....)).))))---.)--))....(((....))).--.............))---------)))). ( -16.80) >consensus ACAAUUAGUAUAAAUUGACUGGCGUGUUGAGUGGCCCCACUCACACACACAC__ACAC__A____CUCACACGACGACAAUGACACCAUGACACCAAUGACA .(((((......)))))......((((.(((((....)))))))))........................................................ (-10.05 = -11.05 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:48 2006