Locus 2742

Sequence ID 3R_DroMel_CAF1
Location 7,344,055 – 7,344,155
Length 100
Max. P 0.930972
window4457

overview

Window 7

Location 7,344,055 – 7,344,155
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 68.98
Mean single sequence MFE -22.85
Consensus MFE -13.38
Energy contribution -14.63
Covariance contribution 1.26
Combinations/Pair 1.38
Mean z-score -1.67
Structure conservation index 0.59
SVM decision value 1.21
SVM RNA-class probability 0.930972
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7344055 100 - 27905053
AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCUACGCAUCAAAUAUUCAUUGGCAAACCGGACCUUGUUGCAACUCCACAAU
.............(((((......(((.((((.((.(((((((....))))))).)).)))).)))....((((...........))))...)))))... ( -20.40)
>DroSec_CAF1 20154 100 - 1
AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCACGCAUCAAAUAUUCAUUGGCAAGCCGGACCUUGUUGCAACUCCACGAU
............((((((..(((.(((.((((.((.(((((((....))))))).)).)))).)))...((((((......)))))).))).)))))).. ( -27.00)
>DroSim_CAF1 25577 100 - 1
AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCACGCAUCAAAUAUUCAUUGGCAAGCCGGACCUUGUUGCAACUCUACGAU
............((((((..(((.(((.((((.((.(((((((....))))))).)).)))).)))...((((((......)))))).))).)))))).. ( -24.70)
>DroEre_CAF1 24018 99 - 1
AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCAGGGAUCAAAUAUUCAUU-GCAACCCCUACCUUGUUGCAAUUUCUCGAC
.........((....))...((((((((((((.((((.(((((....))))).)))).)))).....((-(((((.........))))))))))))))). ( -24.90)
>DroWil_CAF1 16224 76 - 1
------GGGUAUGGGAAGGAGAAGUAACAACAGAUCAACAAAUAUGGGUAAAUGAUAAACAAAUUUUGAAAC------------------UCUUUGAUCA
------.....(((.((((((..((....)).......((((..((..((.....))..))...))))...)------------------)))))..))) (  -6.90)
>DroYak_CAF1 24725 99 - 1
AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCACGGAUCAAAUAUUCAUU-GCAACCCGGACCUUGUUGCAAAUCCACGAA
............((((((......(((.((((.((((((((((....)))))))))).)))).))).((-(((((.........))))))).)))))).. ( -33.20)
>consensus
AACAAAAAACCACGUGGAAAUUGGGAAAAUUUAGUUUGUGGUCAUCCGGCCACGCAUCAAAUAUUCAUUGGCAACCCGGACCUUGUUGCAACUCCACGAU
............((((((......(((.((((.((.(((((((....))))))).)).)))).)))....((((...........))))...)))))).. (-13.38 = -14.63 +   1.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:47 2006