Locus 2740

Sequence ID 3R_DroMel_CAF1
Location 7,340,614 – 7,340,734
Length 120
Max. P 0.938539
window4455

overview

Window 5

Location 7,340,614 – 7,340,734
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.58
Mean single sequence MFE -31.40
Consensus MFE -25.24
Energy contribution -25.34
Covariance contribution 0.10
Combinations/Pair 1.20
Mean z-score -2.00
Structure conservation index 0.80
SVM decision value 1.27
SVM RNA-class probability 0.938539
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7340614 120 + 27905053
GUAGUCGUGGAAUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAAGCAAUAAAAUGCUG
.(((...((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))....)))....((((......)))). ( -29.50)
>DroSec_CAF1 16798 107 + 1
GUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUAAAUAAAUUCCUGGAUUCCAAAGACUGGACAAG-------------
.(((((.((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))..)))))......------------- ( -33.10)
>DroSim_CAF1 22178 120 + 1
GUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUAAAUAAAUUCCUGGAUUCCAAAGUCUGGACAAGCAAUAAAAUGCUG
.(((...((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))....)))....((((......)))). ( -32.40)
>DroEre_CAF1 20594 120 + 1
GUAGUCGUGAAGUGCAGGGGUAUAUGUGUGCAUGCCAAUGAAGAAUAUGUACUAUGUAUUUCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCCGGACAAGCACUAAAAUGCUG
.((((.((...((.(((..(((((((.(((((((...........))))))))))))))..))).)).)).)))).........(((((((....)))))))...((((......)))). ( -33.30)
>DroYak_CAF1 21285 120 + 1
GUAGUCGUGGAGUGCAGGGGAAUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUGUACUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAGGCAACCAAAUGCUG
.((((..(((.(..((.(......).))..).((((..(((((..((.(((((.(((.(..(((.....)))..).))).)))))))..)))))..((....)).)))).)))...)))) ( -28.70)
>consensus
GUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAAGCAAUAAAAUGCUG
...(((.((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).)))))).......))).((((......)))). (-25.24 = -25.34 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:45 2006