Locus 274

Sequence ID 3R_DroMel_CAF1
Location 1,070,219 – 1,070,330
Length 111
Max. P 0.560728
window472

overview

Window 2

Location 1,070,219 – 1,070,330
Length 111
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 77.27
Mean single sequence MFE -24.07
Consensus MFE -18.82
Energy contribution -18.93
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.16
Structure conservation index 0.78
SVM decision value 0.05
SVM RNA-class probability 0.560728
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1070219 111 - 27905053
GUUGACUGGUCUAAUAACCCGGUAUACUGGUAUAAAUCGAAAUUAAAUUAAAUUUGUGGGAUUAACCAUGUUGAUGGUGAACUGGCUUAUGCUUGUUAGCCGCACUUAACA
((..((((((.((((..(((((....)))).((((((..((......))..)))))))..)))))))).))..))(((.(((.(((....))).))).))).......... ( -24.00)
>DroSec_CAF1 6410 86 - 1
CUUGACUGGUAUAAUAACCCGGAAU-------------------------CAUUUGUGGGAUUAACCAUACUGGUGGUGAACUGGCUCAGGCUUGUUAGCCGCACUUAAUA
......((((.((((..((((.((.-------------------------...)).)))))))))))).....(((((.(((.(((....))).))).)))))........ ( -23.10)
>DroSim_CAF1 6568 86 - 1
CUUGACUGGUAUAAUAACCCGGAAU-------------------------CAUUUGUGGGAUUAACCAUGUUGGUGGUGAACUGGCUUAGGCUUGUUAGCCGCACUUAAUA
...(((((((.((((..((((.((.-------------------------...)).)))))))))))).))).(((((.(((.(((....))).))).)))))........ ( -25.10)
>consensus
CUUGACUGGUAUAAUAACCCGGAAU_________________________CAUUUGUGGGAUUAACCAUGUUGGUGGUGAACUGGCUUAGGCUUGUUAGCCGCACUUAAUA
.....((((.........))))................................(((((......)))))...(((((.(((.(((....))).))).)))))........ (-18.82 = -18.93 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:13 2006