Locus 2738

Sequence ID 3R_DroMel_CAF1
Location 7,333,319 – 7,333,432
Length 113
Max. P 0.935031
window4451

overview

Window 1

Location 7,333,319 – 7,333,432
Length 113
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 90.41
Mean single sequence MFE -23.43
Consensus MFE -17.42
Energy contribution -17.86
Covariance contribution 0.44
Combinations/Pair 1.10
Mean z-score -2.58
Structure conservation index 0.74
SVM decision value 1.24
SVM RNA-class probability 0.935031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7333319 113 + 27905053
CCUCGACAGUACUGAAUCAAUCAA-AACCAGGACCUUGUCACCAGCUUGUCAUACUAAAGACACAACAC----ACAUAGUUGUCACGUGAUAAAUUCCUUUUAUUCAUUGCUGCCCUU
......(((((.(((((.((....-....((((..(((((((......(((........)))(((((..----.....)))))...)))))))..)))))).))))).)))))..... ( -24.00)
>DroSec_CAF1 9535 112 + 1
CCUCGACAGUACUGAAUCAAUCAA-AACCAGGACCUUGUCAUCAGCUUGUCAUACUAAAGACACAACAC----ACAUAGUUGUCACGUAAUAAAUUCCUUUUAUUCAUUGCUGC-CUU
....(.(((((.(((((.((....-....((((..((((.........(((........)))(((((..----.....)))))......))))..)))))).))))).))))).-).. ( -16.30)
>DroSim_CAF1 13338 112 + 1
CCUCGACAGUACUGAAUCAAUCAA-AACCAGGACCUUGUCAUCAGCUUGUCAUACUAAAGACACAACAC----ACAUAGUUGUCACGUGAUAAAUUCCUUUUAUUCAUUGCUGC-CUU
....(.(((((.(((((.((....-....((((..(((((((......(((........)))(((((..----.....)))))...)))))))..)))))).))))).))))).-).. ( -22.20)
>DroEre_CAF1 13349 117 + 1
CCUCUACAGUACUGAAUCAAUCAAGAUCCAGGACAUUGUCACCGCCUUGUCAUACUAAAGACACAACAUACAUACAUAGUUUUCUCGUGAUAAAUUCCUUUAAUGCAUUGUCAC-CUU
..(((..(((((((.(((......))).)))((((..((....))..)))).))))..))).........................(((((((..............)))))))-... ( -16.54)
>DroYak_CAF1 13793 113 + 1
CCUCGGCAGUACUGAAUCAAUCAAGAACCAGGACCUUGUCACCGACUUGUCAUACUAAAGACACAGCAC----ACAUAGUUGUCUCGUGAUAAAAUCCUUUGAUUCAUUGCUGC-CUU
....(((((((.((((((((.........((((..(((((((.((....))........((.(((((..----.....))))).)))))))))..)))))))))))).))))))-).. ( -38.10)
>consensus
CCUCGACAGUACUGAAUCAAUCAA_AACCAGGACCUUGUCACCAGCUUGUCAUACUAAAGACACAACAC____ACAUAGUUGUCACGUGAUAAAUUCCUUUUAUUCAUUGCUGC_CUU
......(((((.(((((.((.........((((..(((((((......(((........)))(((((...........)))))...)))))))..)))))).))))).)))))..... (-17.42 = -17.86 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:41 2006