Locus 2737

Sequence ID 3R_DroMel_CAF1
Location 7,331,486 – 7,331,576
Length 90
Max. P 0.736674
window4450

overview

Window 0

Location 7,331,486 – 7,331,576
Length 90
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 74.77
Mean single sequence MFE -22.97
Consensus MFE -10.69
Energy contribution -11.38
Covariance contribution 0.70
Combinations/Pair 1.42
Mean z-score -1.93
Structure conservation index 0.47
SVM decision value 0.44
SVM RNA-class probability 0.736674
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7331486 90 + 27905053
AGUAAAUAGGUGGAGAGAGCAUAUGUGCU-GGCUAGG-----C--UAUAUAUAGUCAAUCUUGGCUAUGUGGCAA--A-------UGGGACAUAUACAUUUUGUUCA
.((.....(((..((..((((....))))-..))..)-----)--).((((((((((....))))))))))))..--.-------..(((((.........))))). ( -21.80)
>DroSec_CAF1 7669 90 + 1
AGUAAAUAGGUCGGGAGUGCAUAUGUGCU-GGCUAGG-----C--UAUAUAUAGUCAAUCUUGGCUAUGUGGCAA--A-------UAAGACAGAUACAUUUUGCUCA
..............(((((...(((((((-(.((..(-----(--(((..(((((((....))))))))))))..--.-------..)).))).)))))..))))). ( -22.50)
>DroSim_CAF1 11482 90 + 1
AGUAAAUAGGUCGAGAGAGCAUAUGUGCU-GGCUAGG-----C--UAAAUAUAGUCAAUCUUGGCUAUGUGGCAA--A-------UAAGACAGAUACAUUUUGCUCA
................(((((.(((((((-(.((..(-----(--(..(((((((((....))))))))))))..--.-------..)).))).)))))..))))). ( -26.30)
>DroEre_CAF1 11507 80 + 1
AGUAAAUGGGUCGAGAGUGCAUAUGUGCU-GGCUAU--------------AUAGUC-AUCUUGGCUAUGUGGCGA--A-------UAAGACAGAUACAUUAUGC--A
.(((((((..((...((..(....)..))-.(((((--------------((((((-.....)))))))))))..--.-------.......))..)))).)))--. ( -25.90)
>DroYak_CAF1 11851 96 + 1
AGUAAAUAGGUCGAGAGUGCAUAUGUUCU-GGCUAUGAGGUCCUAUAUACAUAGUC-AUCUUGGCUAUGUGGCGA--U-------UAAGACAGAUACAUUAUGCUCA
................(.(((((((((((-(.((....((((.....(((((((((-.....)))))))))..))--)-------).)).)))).))).))))).). ( -23.40)
>DroAna_CAF1 5210 90 + 1
AGUAAAUAGGUCGAGAGUGCAUUUGUGUGCAGCCAG----------AUGUAUGGAC-GU----GGUAUAUAGCGCACAUAAUAUAUAUGAUAUAUAUAAUAUAU--G
................((((..((((((((.((((.----------.....))).)-..----.)))))))).))))(((.(((((((...))))))).)))..--. ( -17.90)
>consensus
AGUAAAUAGGUCGAGAGUGCAUAUGUGCU_GGCUAGG_____C__UAUAUAUAGUC_AUCUUGGCUAUGUGGCAA__A_______UAAGACAGAUACAUUAUGCUCA
.(((....((((...((..(....)..)).)))).............(((((((((......))))))))).......................))).......... (-10.69 = -11.38 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:40 2006