Locus 2736

Sequence ID 3R_DroMel_CAF1
Location 7,330,862 – 7,330,962
Length 100
Max. P 0.877647
window4449

overview

Window 9

Location 7,330,862 – 7,330,962
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 91.80
Mean single sequence MFE -17.52
Consensus MFE -14.82
Energy contribution -14.26
Covariance contribution -0.56
Combinations/Pair 1.16
Mean z-score -1.58
Structure conservation index 0.85
SVM decision value 0.90
SVM RNA-class probability 0.877647
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7330862 100 - 27905053
AAAAUUGUAAAAUAAAUAUUUUAGGUCGUUACUUAUUAAAGGGCUGAAUUUAAAUAUUAAAGCUGGCAUACUCUGUACGAAAAGCAGUGAAAACAAUUAU
..((((((......(((((((..((((.((........)).))))......)))))))...(((..(.(((...))).)...))).......)))))).. ( -12.60)
>DroSec_CAF1 7045 100 - 1
AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUACUUAUUAAAGGGAUGAAUUUAAAUAUUAAAGCGGGCUUACCCUGCACGAAAAGCAGUGAAAACAAUUAU
..((((((......(((((((....((((..(((....)))..))))....)))))))...(((((.....)))))................)))))).. ( -19.60)
>DroSim_CAF1 10858 100 - 1
AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUACUUAUUAAAGGGAUGAAUUUAAAUAUUAAAGCUGGCUUACCCUGCACGAAAAGCAGUGAAAACAAUUAU
..((((((......(((((((....((((..(((....)))..))))....)))))))............(.((((.......)))).)...)))))).. ( -16.70)
>DroEre_CAF1 10900 100 - 1
AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUGCUUAUUAAAGGGAUGAAUUUAAAUAUUAAAGCUGUCUUACGCGGCACGAAAACAAGCUAAAACAAUUAU
..((((((......(((((((....(((((.(((....))).)))))....)))))))...(((((.....)))))................)))))).. ( -19.60)
>DroYak_CAF1 11188 100 - 1
AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUGCUUAUUAAAGGGAUGGAUUUAAAUAUUAAAGCCGGCUUAGCCUGCACGACAGCAAGUUAAAACAAUUAU
..((((((......(((((((....(((((.(((....))).)))))....))))))).........(((((.(((......))).))))).)))))).. ( -19.10)
>consensus
AAAAUUGUAAAAUAAAUAUUUUAAGUCGUUACUUAUUAAAGGGAUGAAUUUAAAUAUUAAAGCUGGCUUACCCUGCACGAAAAGCAGUGAAAACAAUUAU
..((((((......(((((((....(((((.(((....))).)))))....)))))))...((.((.....)).))................)))))).. (-14.82 = -14.26 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:39 2006