Locus 2734

Sequence ID 3R_DroMel_CAF1
Location 7,327,837 – 7,327,937
Length 100
Max. P 0.992629
window4446

overview

Window 6

Location 7,327,837 – 7,327,937
Length 100
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 90.10
Mean single sequence MFE -22.91
Consensus MFE -22.18
Energy contribution -22.23
Covariance contribution 0.06
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.97
SVM decision value 2.34
SVM RNA-class probability 0.992629
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7327837 100 - 27905053
UUC-AUCACCAUAUCCCCAUCAUCCCUAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC
...-......................(((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))))... ( -23.80)
>DroSec_CAF1 4137 100 - 1
UCC-AUCUCCAUAUACCCAUCAUCCCUAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUUCUC
...-.......................((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))).... ( -22.50)
>DroSim_CAF1 7921 100 - 1
ACC-AUCUCCAUAUCGCCAUCAUCCCUAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC
...-......................(((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))))... ( -23.80)
>DroEre_CAF1 7843 100 - 1
UCU-AUCUCCAUAUACCCAUCAUCCCGAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC
...-.......................((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))).... ( -23.30)
>DroYak_CAF1 8089 100 - 1
UCC-AUCUCCAUAUACCCAUCAUCCCGAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC
...-.......................((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))).... ( -23.30)
>DroAna_CAF1 897 90 - 1
UCUAAGCUCC-----------GCCCACUGUUGCACUUCCCCAAGCGGGCCCUAAACUGAGCUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC
....((((.(-----------((((.((..............)).))))..........(((((.(((........)))...)))))....).)))).... ( -20.74)
>consensus
UCC_AUCUCCAUAUACCCAUCAUCCCUAGCUGCAGUUCCCCAAGCGGGCCCUAAACUGAGUUCAGGUGCCAUAAAUUACAAAUGAGCAAUUGCAGCUGCUC
...........................((((((((((.(((....)))...........(((((.(((........)))...))))))))))))))).... (-22.18 = -22.23 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:36 2006