Locus 2731

Sequence ID 3R_DroMel_CAF1
Location 7,325,224 – 7,325,328
Length 104
Max. P 0.664104
window4441

overview

Window 1

Location 7,325,224 – 7,325,328
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.79
Mean single sequence MFE -23.84
Consensus MFE -22.08
Energy contribution -22.08
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.16
Structure conservation index 0.93
SVM decision value 0.28
SVM RNA-class probability 0.664104
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7325224 104 - 27905053
AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACAACCACACAC----------------
............((((((((......(((....))).....))))))))...((((.(((((.......))))))))).((((..((....).)..))))....---------------- ( -22.30)
>DroSec_CAF1 1554 104 - 1
AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGCCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCUGUGGCAGCAACAGACAACCACACAC----------------
............(((((((((.....(((....)))....)))))))))..(((((.(((((.......))))))))))((((..((....).)..))))....---------------- ( -27.40)
>DroSim_CAF1 5319 104 - 1
AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACAACCACACAC----------------
............((((((((......(((....))).....))))))))...((((.(((((.......))))))))).((((..((....).)..))))....---------------- ( -22.30)
>DroEre_CAF1 5294 120 - 1
AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACUACCACACACACUCCCAAACUCCCAC
....(((((..((((((((.......(((....)))...(((..........))).))))))))..))))).((((...((((.(((....).)).))))...))))............. ( -24.90)
>DroYak_CAF1 5434 106 - 1
AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACAACCACACAC------------CC--
............((((((((......(((....))).....))))))))...((((.(((((.......))))))))).((((..((....).)..))))....------------..-- ( -22.30)
>consensus
AACAUCAAUAAUAGAAGGCGGAAAACUCAUGCAUGACAAGGCGCCUUUUUAAGCCAGCUUUUUGCAAUUGAAAGUGGCAGUGGCAGCAACAGACAACCACACAC________________
............((((((((......(((....))).....))))))))...((((.(((((.......))))))))).((((.............)))).................... (-22.08 = -22.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:31 2006