| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,069,848 – 1,069,959 |
| Length | 111 |
| Max. P | 0.648203 |
| Location | 1,069,848 – 1,069,959 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.34 |
| Mean single sequence MFE | -40.99 |
| Consensus MFE | -20.26 |
| Energy contribution | -20.52 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1069848 111 + 27905053 GCAAUGUUCUGGACACCAAUCAGGUUGGGUGACAAAUACUCCCGCUCGCCGGGAUUCAGAACGUGGACCAGCGUGAUCGGGGGCUCACUCAC---C---GCCUGGUCC---GUUGUUGUU (((((((((((((((((..........))))........(((((.....)))))))))))))..(((((((.(((....(((.....)))..---)---)))))))))---))))).... ( -42.10) >DroVir_CAF1 4984 111 + 1 GCAAUAUUCUGCACGCCAAUCAAAUUGGGCGACAGAUAUUCCCGCUCCCCGGGAUUAAGCACAUGUACCAAUUUGAUGGGCGGCUCGCUGAU---CCCUGCCUCAUCC---GUGCUC--- ..........(((((((.((((((((((...(((.....(((((.....))))).........))).)))))))))).)))(((........---....)))......---))))..--- ( -37.34) >DroGri_CAF1 7447 111 + 1 GCAAUAUUCUGGACACCAAUUAAAUUGGGCGAGAGAUAUUCACGCUCGCCAGGAUUCAACACAUGGACCAAUUUGAUGGGUGGCUCGGUGAU---C---GCCUCAGCU---GUGCUCUCC (((.....((((.((((.((((((((.((((((.(.......).)))))).((.((((.....)))))))))))))).))))....(((...---.---)))))))..---.)))..... ( -33.40) >DroMoj_CAF1 6009 108 + 1 GCUAUAUUCUGCACGCCAAUCAAAUUGGGCGAGAGAUACUCUCGCUCUCCAGGAUUCAGCACAUGGACCAAUUUGAUAGGCGGCUCGCUGAU---C---GCCUCAUCC---GUACUC--- ((.((.....((.((((.(((((((((((((((((...)))))))..((((.(......)...)))))))))))))).))))))......))---.---)).......---......--- ( -38.00) >DroAna_CAF1 6206 114 + 1 GCUAUGUUCUGGACUCCGAUCAGGUUGGGGGACAGGUACUCCCGCUCGCCGGGAUUCAGGACGUGGACCAGCUUCACGGCCGGUUCACUGACGGGC---GUCUGGUCC---GUGGCCGCC (((((((((((((..(((....(..((((((.......))))))..)..)))..))))))))..(((((((....(((.(((.........))).)---)))))))))---))))).... ( -51.10) >DroPer_CAF1 8249 114 + 1 GCUAUGUUCUGCACGCCGAUCAGAUUGGGCGACAGAUACUCCCGCUCUCCGGGAUUCAGGACAUGCACCAAUUUGAUCGGUGGCUCACUCAC---G---CCCUGUGCCUCAGUGGUUGUC (((((.....(((((((((((((((((((((........(((((.....))))).........))).))))))))))))))(((........---)---))..))))....))))).... ( -44.03) >consensus GCAAUAUUCUGCACGCCAAUCAAAUUGGGCGACAGAUACUCCCGCUCGCCGGGAUUCAGCACAUGGACCAAUUUGAUGGGCGGCUCACUGAC___C___GCCUCAUCC___GUGCUCG_C .............((((.((((((((((...........(((((.....))))).............)))))))))).))))...................................... (-20.26 = -20.52 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:12 2006