Locus 2729

Sequence ID 3R_DroMel_CAF1
Location 7,324,285 – 7,324,405
Length 120
Max. P 0.904455
window4438

overview

Window 8

Location 7,324,285 – 7,324,405
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.00
Mean single sequence MFE -31.19
Consensus MFE -24.82
Energy contribution -25.10
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -1.92
Structure conservation index 0.80
SVM decision value 1.04
SVM RNA-class probability 0.904455
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7324285 120 + 27905053
AAAGAAGACUACACGGAAUGGCACUUGUCGUUCCACUCGAGAAGUUUCAGCGAAAGUGAUCCUUUCAUCGGACUGCUUUGAAAUAUUGAACUUAACAUAUUAAAGCAUACUUUUCUGGGC
..((((((......((((((((....))))))))..((((((((..(((.(....))))..))))..))))..((((((((.((.(((....))).)).))))))))...)))))).... ( -30.60)
>DroSec_CAF1 609 120 + 1
AAAGAAGACUACACGGAAUGGCACUUGUCGUUCCACUCGAGAAGUUUCAGCGAAAGUGAUCCCUUCAGCGGACUGCUUUGAAAUAUUGAAUUUAACAUAUUAAAGCUUACUUAUCGGGGA
..............((((((((....)))))))).(((((.((((...(((.(((((..((((....).)))..)))))...........(((((....)))))))).)))).))))).. ( -31.10)
>DroSim_CAF1 4366 120 + 1
AAAGAAGACUACACGGAAUGGCACUUGUCGUUCCACUCGAGAAGUUUCAGCGAAAGUGAUCCUUUCAGCGGACUGCUUUGAAAUAUUGAAUUUAACAUAUUAAAGCUUACUUUUCGGGGA
..............((((((((....)))))))).((((((((((.((.(((((((.....))))).)).))..(((((((.((.(((....))).)).)))))))..)))))))))).. ( -35.10)
>DroEre_CAF1 4341 120 + 1
AAAGAAGACUACACAGAGUGGUACUUGUCGUUCCACUCCAGAAGUUUCAGCGAAAGUGAUCCUUUCAACGGUCUGCUUUGAAAUAUUGAAUUUAACAUAUUAAAGCAUUCUUUUCGAGGC
.....(((((.....((((((.((.....)).))))))..((((..(((.(....))))..))))....)))))(((((((((.......(((((....))))).......))))))))) ( -31.14)
>DroYak_CAF1 4479 120 + 1
AAAGAAGACGACACAGAAUGAUACUUGUCGUUCCACUCCAGAAGUUUCAGCGAAAGUGAUCCUUUCAAUGGUCUGCUUUGAAAUAUUGAAUUCAGCAUAUUAAAGCAUUCUUUUCGAGGC
((((((...(((.(((((((((....))))))).......((((..(((.(....))))..))))...)))))((((((((.((.(((....))).)).))))))))))))))....... ( -28.00)
>consensus
AAAGAAGACUACACGGAAUGGCACUUGUCGUUCCACUCGAGAAGUUUCAGCGAAAGUGAUCCUUUCAACGGACUGCUUUGAAAUAUUGAAUUUAACAUAUUAAAGCAUACUUUUCGGGGC
..............((((((((....)))))))).(((((((((.......(((((.....)))))........(((((((.((.(((....))).)).)))))))...))))))))).. (-24.82 = -25.10 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:28 2006