Locus 2727

Sequence ID 3R_DroMel_CAF1
Location 7,323,261 – 7,323,380
Length 119
Max. P 0.982065
window4432

overview

Window 2

Location 7,323,261 – 7,323,380
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.09
Mean single sequence MFE -28.26
Consensus MFE -17.96
Energy contribution -17.78
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -3.07
Structure conservation index 0.64
SVM decision value 1.90
SVM RNA-class probability 0.982065
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7323261 119 - 27905053
AGAUACAAAUACACAGAUAGAAAUUCAGCUUCG-AGCUAAGGAGUAGCAAGAGGAUAAAGAAUGUCUGGGCGAAAGCAAGGUGAAAGCCGGCUAAAUAUGCCAAAAGUAGUUGCAGGAAA
.....(((.(((.((((((.........((((.-.((((.....))))..))))........)))))).((....))..(((....)))(((.......)))....))).)))....... ( -31.63)
>DroSim_CAF1 3367 100 - 1
--------------------AAAUUCAGCUUCGGAGCUAAGGAGUAGCAAGAGGAUAAAGAAUGUCGGGGCGAAAGCAAGGUGAAAGCCGGCUAAAUAUGCCAAAAGUAGUUGCAGGAAA
--------------------...(((.(((((...((((.....)))).....((((.....)))))))))....(((((((....)))(((.......)))........))))..))). ( -26.30)
>DroEre_CAF1 3356 110 - 1
AGAUACA--------GAUACAAAUUUAGCUUCG-CAGUAAGGCGGAUCCAGAGGAUAAAGAAUGUCU-GGCGAAAGCUAGGUGAAAGCCGGCCAAAUAUGCCAAAAGUAGUUGCAGGAAA
.....((--------(.(((.....((((((((-(....(((((.((((...))))......)))))-.))).))))))(((....)))(((.......)))....))).)))....... ( -28.40)
>DroYak_CAF1 3456 110 - 1
AGAUACA--------GAUACAAAUUCAGCUGCG-AUGUGAGGAGGAGCCAAAGGAUAAAGAAUGUCG-GGCGAAAGCAAGGUGAAAGCCGGCUAAAUAUGCCAAAAGUAGUUGCAGGAAA
.......--------.............(((((-((....((....(((....((((.....)))).-.((....))..))).....))(((.......))).......))))))).... ( -26.70)
>consensus
AGAUACA________GAUACAAAUUCAGCUUCG_AGCUAAGGAGGAGCAAGAGGAUAAAGAAUGUCG_GGCGAAAGCAAGGUGAAAGCCGGCUAAAUAUGCCAAAAGUAGUUGCAGGAAA
.........................(((((.(.....................((((.....))))...((....))..(((....)))(((.......)))....).)))))....... (-17.96 = -17.78 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:22 2006