Locus 2725

Sequence ID 3R_DroMel_CAF1
Location 7,322,498 – 7,322,618
Length 120
Max. P 0.587572
window4430

overview

Window 0

Location 7,322,498 – 7,322,618
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.97
Mean single sequence MFE -26.38
Consensus MFE -22.44
Energy contribution -22.50
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.79
Structure conservation index 0.85
SVM decision value 0.11
SVM RNA-class probability 0.587572
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7322498 120 + 27905053
GCCUCAAAUAAAUUCGCAAGAAUUGAGCAAACUUUAGAGGAUUUCGAUUUGUUUUCCAUGAAAAUGGGCAAAUGCUAAAUGGAAAAUGGAAAAUUGAAAAUGAGAACCUGGCUAUGGGUA
.((((.....(((((....)))))(((....)))..)))).((((((((((((((((((.......(((....)))..)))))))))...)))))))))......((((......)))). ( -30.70)
>DroSim_CAF1 2625 120 + 1
GCCUCAAAUAAAUUCGCAAGAAUUGAGCAAACUUUAGAGGAUUGCGAUUUGUUUUCCAUGGAAAUGGGCAAAUGCUAAAUGGAAAAUUGAAAAUUGAAAAUGAGAACCUGGCUAUGGGUA
..((((....(((((....)))))..((((.((.....)).))))((((((((((((((.......(((....)))..)))))))))...))))).....)))).((((......)))). ( -27.80)
>DroEre_CAF1 2615 120 + 1
GCCUCAAAUAAAUUUGCAAGAAUUGAGCAAACUUUAGAGGAUUGCGAUUUGUUUUCCAUGAAAAUGGGCAAAUGCUAAAUGGAAAAUUGAAAAUUGAAAAUGAGAACCUGACUAGGGGUA
(((((...(((((((((.........))))).)))).(((.((.(((((((((((((((.......(((....)))..)))))))))...)))))).......)).))).....))))). ( -24.70)
>DroYak_CAF1 2636 120 + 1
GCCUCAAAUAAAUUUGCAAGAAUUGAACAAACUUUAGAGGAUUGCGAUUUGUUUUCCCUGAAAAUGGGCAAAUGCUAAAUGGGAAAUUGAAAAUUGAAAAUGAGAACCUGGCUAGGGGUA
..((((((((((((.((((...(((((.....)))))....))))))))))))(((((........(((....)))....)))))...............)))).((((......)))). ( -22.30)
>consensus
GCCUCAAAUAAAUUCGCAAGAAUUGAGCAAACUUUAGAGGAUUGCGAUUUGUUUUCCAUGAAAAUGGGCAAAUGCUAAAUGGAAAAUUGAAAAUUGAAAAUGAGAACCUGGCUAGGGGUA
.((((.....(((((....)))))(((....)))..))))....(((((((((((((((.......(((....)))..)))))))))...)))))).........((((......)))). (-22.44 = -22.50 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:20 2006