| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,318,155 – 7,318,385 |
| Length | 230 |
| Max. P | 0.999838 |
| Location | 7,318,155 – 7,318,265 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.43 |
| Mean single sequence MFE | -21.36 |
| Consensus MFE | -15.79 |
| Energy contribution | -15.59 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7318155 110 + 27905053 AAAUCCAUUUCAUGGCAUGCCAUCUACUCCAGACCUCC----------GCUGAAACGCUGUGAGAUAUUACCCAAAUGACCUUUCAUCUGGUCCCUGAAAUGGUAUUUCAAUCAAUUCAU ((((((((((((.((...........((((((...((.----------...))....))).))).......(((.((((....)))).))).)).)))))))).))))............ ( -21.90) >DroSec_CAF1 11018 110 + 1 AAAUCCAUUUCAUGGCUUGCCAUCUACUCCAGACCUCC----------GCAGAAACGCUGUGAGAUAUUACCCAAAUGACCUUUCAUCUGGUCCCUGAAAUGGUAUUUCAAUCAAUUCAU (((((((((((((((....)))......(((((.(((.----------((((.....)))))))............(((....))))))))....)))))))).))))............ ( -23.80) >DroSim_CAF1 8048 110 + 1 AAAUCCAUUUCAUGGCUUGCCAUCUACUCCAGACCUCC----------GCAGAAACGCUGUGAGAUAUUACCCAAAUGACCUUUCAUCUGGUCCCUGAAAUGGUAUUUCAAUCAAUUCAU (((((((((((((((....)))......(((((.(((.----------((((.....)))))))............(((....))))))))....)))))))).))))............ ( -23.80) >DroEre_CAF1 11123 105 + 1 AAAUCCAUUUCAC-----ACCAUCUCCUCCAGACCGCC----------GCAGAAACGUUGUGAGAUAUUACCCAAAUGACCUUUCAUCUGGUCCCUGAAAUGGCAUUUCAAUCAAUUCAU ((((((((((((.-----...(((((.........((.----------((......)).)))))))...........((((........))))..)))))))).))))............ ( -17.70) >DroYak_CAF1 5597 115 + 1 AAAUCCAUUUUAU-----ACCAUCUCCUCGAGACCUCCCUCAUUUCCUCCAGAAACGUUGUGAGAUAUUACCCAAAUGACCUUUCAUCUGGUCCCUGAAAUGGCAUUUCAAUCAAUUCAU ((((((((((((.-----...(((((...(((......))).((((.....))))......)))))...........((((........))))..)))))))).))))............ ( -19.60) >consensus AAAUCCAUUUCAUGGC_UGCCAUCUACUCCAGACCUCC__________GCAGAAACGCUGUGAGAUAUUACCCAAAUGACCUUUCAUCUGGUCCCUGAAAUGGUAUUUCAAUCAAUUCAU ((((((((((((..............((((((.........................))).))).............((((........))))..)))))))).))))............ (-15.79 = -15.59 + -0.20)
| Location | 7,318,155 – 7,318,265 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.43 |
| Mean single sequence MFE | -32.42 |
| Consensus MFE | -21.28 |
| Energy contribution | -21.44 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7318155 110 - 27905053 AUGAAUUGAUUGAAAUACCAUUUCAGGGACCAGAUGAAAGGUCAUUUGGGUAAUAUCUCACAGCGUUUCAGC----------GGAGGUCUGGAGUAGAUGGCAUGCCAUGAAAUGGAUUU .................((((((((.((.((((((((....))))))))((.((..(((.((((.((.....----------.)).).))))))...)).))...)).)))))))).... ( -30.40) >DroSec_CAF1 11018 110 - 1 AUGAAUUGAUUGAAAUACCAUUUCAGGGACCAGAUGAAAGGUCAUUUGGGUAAUAUCUCACAGCGUUUCUGC----------GGAGGUCUGGAGUAGAUGGCAAGCCAUGAAAUGGAUUU .................((((((((.((.((((((((....))))))))((.((..(((.(((.(..((...----------.))..)))))))...)).))...)).)))))))).... ( -30.70) >DroSim_CAF1 8048 110 - 1 AUGAAUUGAUUGAAAUACCAUUUCAGGGACCAGAUGAAAGGUCAUUUGGGUAAUAUCUCACAGCGUUUCUGC----------GGAGGUCUGGAGUAGAUGGCAAGCCAUGAAAUGGAUUU .................((((((((.((.((((((((....))))))))((.((..(((.(((.(..((...----------.))..)))))))...)).))...)).)))))))).... ( -30.70) >DroEre_CAF1 11123 105 - 1 AUGAAUUGAUUGAAAUGCCAUUUCAGGGACCAGAUGAAAGGUCAUUUGGGUAAUAUCUCACAACGUUUCUGC----------GGCGGUCUGGAGGAGAUGGU-----GUGAAAUGGAUUU ..(((((.(((...((((((((((.....((((((((....)))))))).......(((.((.((((.....----------))))...)))))))))))))-----))..))).))))) ( -31.20) >DroYak_CAF1 5597 115 - 1 AUGAAUUGAUUGAAAUGCCAUUUCAGGGACCAGAUGAAAGGUCAUUUGGGUAAUAUCUCACAACGUUUCUGGAGGAAAUGAGGGAGGUCUCGAGGAGAUGGU-----AUAAAAUGGAUUU ..(((((.(((...((((((((((.((((((((((((....))))))))......((((.(..((((((.....))))))..)))))))))...))))))))-----))..))).))))) ( -39.10) >consensus AUGAAUUGAUUGAAAUACCAUUUCAGGGACCAGAUGAAAGGUCAUUUGGGUAAUAUCUCACAGCGUUUCUGC__________GGAGGUCUGGAGUAGAUGGCA_GCCAUGAAAUGGAUUU .................((((((((((((((((((((....))))))))......))))...........................(((((...))))).........)))))))).... (-21.28 = -21.44 + 0.16)
| Location | 7,318,225 – 7,318,345 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.58 |
| Mean single sequence MFE | -26.36 |
| Consensus MFE | -24.96 |
| Energy contribution | -25.28 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7318225 120 + 27905053 CUUUCAUCUGGUCCCUGAAAUGGUAUUUCAAUCAAUUCAUAGACCCCACAAAAUGGCUGAAAACAACAAGAACAUGGGGUCUGUGAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAAC ........(((((..((((((...))))))......((((((((((((.......(.((....)).).......))))))))))))....)))))......................... ( -28.14) >DroSec_CAF1 11088 120 + 1 CUUUCAUCUGGUCCCUGAAAUGGUAUUUCAAUCAAUUCAUAGGCCCCACAAAAUGGCUGAAAAAAACACGAACAUGGGGUCUGUGAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAAC ........(((((..((((((...))))))......((((((((((((.....((...........))......))))))))))))....)))))......................... ( -26.90) >DroSim_CAF1 8118 120 + 1 CUUUCAUCUGGUCCCUGAAAUGGUAUUUCAAUCAAUUCAUAGGCCCCACAAAAUGGCUGAAAACAACACGAACAUGGGGUCUGUGAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAAC ........(((((..((((((...))))))......((((((((((((.......(.((....)).).......))))))))))))....)))))......................... ( -27.54) >DroEre_CAF1 11188 117 + 1 CUUUCAUCUGGUCCCUGAAAUGGCAUUUCAAUCAAUUCAUGGGCCCCACAAAAUGGCUGAAAAUAACACGAACAUGGGGCC---GAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAAC ........(((((..((((((...)))))).......(((.(((((((.....((...........))......)))))))---.)))..)))))......................... ( -25.00) >DroYak_CAF1 5672 118 + 1 CUUUCAUCUGGUCCCUGAAAUGGCAUUUCAAUCAAUUCAUGGGCUCCACAAAAUGGCUGAAAACAACACGAACAUGGGGCCU--GAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAAC ....((((.((((((((...((...(((((..((.((..(((...)))..)).))..)))))....))....)).)))))).--))))..(((........)))................ ( -24.20) >consensus CUUUCAUCUGGUCCCUGAAAUGGUAUUUCAAUCAAUUCAUAGGCCCCACAAAAUGGCUGAAAACAACACGAACAUGGGGUCUGUGAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAAC ........(((((..((((((...))))))......((((((((((((.....((...........))......))))))))))))....)))))......................... (-24.96 = -25.28 + 0.32)
| Location | 7,318,225 – 7,318,345 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.58 |
| Mean single sequence MFE | -33.14 |
| Consensus MFE | -30.72 |
| Energy contribution | -32.36 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7318225 120 - 27905053 GUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUCACAGACCCCAUGUUCUUGUUGUUUUCAGCCAUUUUGUGGGGUCUAUGAAUUGAUUGAAAUACCAUUUCAGGGACCAGAUGAAAG ((((((.......)))))).(((..(((((....(((.((((((((((.....((((....)))).....)))))))))).))).....(((((((...))))))).)))))..)))... ( -37.80) >DroSec_CAF1 11088 120 - 1 GUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUCACAGACCCCAUGUUCGUGUUUUUUUCAGCCAUUUUGUGGGGCCUAUGAAUUGAUUGAAAUACCAUUUCAGGGACCAGAUGAAAG ((((((.......)))))).(((..(((((....(((.((.(((((((.....(((......))).....))))))).)).))).....(((((((...))))))).)))))..)))... ( -29.50) >DroSim_CAF1 8118 120 - 1 GUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUCACAGACCCCAUGUUCGUGUUGUUUUCAGCCAUUUUGUGGGGCCUAUGAAUUGAUUGAAAUACCAUUUCAGGGACCAGAUGAAAG ((((((.......)))))).(((..(((((....(((.((.(((((((.....((((....)))).....))))))).)).))).....(((((((...))))))).)))))..)))... ( -32.80) >DroEre_CAF1 11188 117 - 1 GUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUC---GGCCCCAUGUUCGUGUUAUUUUCAGCCAUUUUGUGGGGCCCAUGAAUUGAUUGAAAUGCCAUUUCAGGGACCAGAUGAAAG ((((((.......)))))).(((..(((((..(((.---(((((((((.....(((......))).....))))))))).)))......(((((((...))))))).)))))..)))... ( -34.70) >DroYak_CAF1 5672 118 - 1 GUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUC--AGGCCCCAUGUUCGUGUUGUUUUCAGCCAUUUUGUGGAGCCCAUGAAUUGAUUGAAAUGCCAUUUCAGGGACCAGAUGAAAG ((((((.......)))))).(((..((((((((...--..)))((.((...(((....(((((..((.((..(((...)))..)).))..)))))...)))..)))))))))..)))... ( -30.90) >consensus GUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUCACAGACCCCAUGUUCGUGUUGUUUUCAGCCAUUUUGUGGGGCCUAUGAAUUGAUUGAAAUACCAUUUCAGGGACCAGAUGAAAG ((((((.......)))))).(((..(((((....(((.((((((((((.....((((....)))).....)))))))))).))).....(((((((...))))))).)))))..)))... (-30.72 = -32.36 + 1.64)
| Location | 7,318,265 – 7,318,385 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.08 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -24.04 |
| Energy contribution | -23.56 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7318265 120 + 27905053 AGACCCCACAAAAUGGCUGAAAACAACAAGAACAUGGGGUCUGUGAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAACUAACCAUGAAAAUUACAUGUUUCCCAGCAAUUUGGCAUUU ((((((((.......(.((....)).).......))))))))..(((((((((........)))..........(((.......((((.......)))).......)))....)))))). ( -24.98) >DroSec_CAF1 11128 120 + 1 AGGCCCCACAAAAUGGCUGAAAAAAACACGAACAUGGGGUCUGUGAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAACUAACCAUGAAAAUUACAUGUUUCCCAGCAAUUUGGCAUUU ((((((((.....((...........))......))))))))..(((((((((........)))..........(((.......((((.......)))).......)))....)))))). ( -23.74) >DroSim_CAF1 8158 120 + 1 AGGCCCCACAAAAUGGCUGAAAACAACACGAACAUGGGGUCUGUGAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAACUAACCAUGAAAAUUACAUGUUUCCCAGCAAUUUGGCAUUU ((((((((.......(.((....)).).......))))))))..(((((((((........)))..........(((.......((((.......)))).......)))....)))))). ( -24.38) >DroEre_CAF1 11228 117 + 1 GGGCCCCACAAAAUGGCUGAAAAUAACACGAACAUGGGGCC---GAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAACUAACCAUGAAAAUUACAUGUUUCCCAGCAAUUUGGCAUUU .(((((((.....((...........))......)))))))---(((((((((........)))..........(((.......((((.......)))).......)))....)))))). ( -25.94) >DroYak_CAF1 5712 118 + 1 GGGCUCCACAAAAUGGCUGAAAACAACACGAACAUGGGGCCU--GAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAACUAACCAUGAAAAUUACAUGUUUCCCAGCAAUUUGGCAUUU ((((((((.......(.((....)).).......))))))))--(((((((((........)))..........(((.......((((.......)))).......)))....)))))). ( -24.08) >consensus AGGCCCCACAAAAUGGCUGAAAACAACACGAACAUGGGGUCUGUGAUGCCGACCACUUAAUGUCACAAUAAAAAUGUAACUAACCAUGAAAAUUACAUGUUUCCCAGCAAUUUGGCAUUU ((((((((.....((...........))......))))))))..(((((((((........)))..........(((.......((((.......)))).......)))....)))))). (-24.04 = -23.56 + -0.48)
| Location | 7,318,265 – 7,318,385 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.08 |
| Mean single sequence MFE | -34.56 |
| Consensus MFE | -33.00 |
| Energy contribution | -33.84 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.95 |
| SVM decision value | 4.21 |
| SVM RNA-class probability | 0.999838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7318265 120 - 27905053 AAAUGCCAAAUUGCUGGGAAACAUGUAAUUUUCAUGGUUAGUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUCACAGACCCCAUGUUCUUGUUGUUUUCAGCCAUUUUGUGGGGUCU ..((((((((((((..(....)..)))))))((((.....((((((.......)))))).....))))..)))))...((((((((((.....((((....)))).....)))))))))) ( -38.30) >DroSec_CAF1 11128 120 - 1 AAAUGCCAAAUUGCUGGGAAACAUGUAAUUUUCAUGGUUAGUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUCACAGACCCCAUGUUCGUGUUUUUUUCAGCCAUUUUGUGGGGCCU ....(((((((.(((((((((((((.......(((((...((((((.......)))))).......((((.........)))))))))..))))))))..))))).)))).....))).. ( -32.10) >DroSim_CAF1 8158 120 - 1 AAAUGCCAAAUUGCUGGGAAACAUGUAAUUUUCAUGGUUAGUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUCACAGACCCCAUGUUCGUGUUGUUUUCAGCCAUUUUGUGGGGCCU ..((((((((((((..(....)..)))))))((((.....((((((.......)))))).....))))..)))))...((.(((((((.....((((....)))).....))))))).)) ( -33.30) >DroEre_CAF1 11228 117 - 1 AAAUGCCAAAUUGCUGGGAAACAUGUAAUUUUCAUGGUUAGUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUC---GGCCCCAUGUUCGUGUUAUUUUCAGCCAUUUUGUGGGGCCC ..((((((((((((..(....)..)))))))((((.....((((((.......)))))).....))))..))))).---(((((((((.....(((......))).....))))))))). ( -36.50) >DroYak_CAF1 5712 118 - 1 AAAUGCCAAAUUGCUGGGAAACAUGUAAUUUUCAUGGUUAGUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUC--AGGCCCCAUGUUCGUGUUGUUUUCAGCCAUUUUGUGGAGCCC ..((((((((((((..(....)..)))))))((((.....((((((.......)))))).....))))..))))).--.(((.(((((.....((((....)))).....))))).))). ( -32.60) >consensus AAAUGCCAAAUUGCUGGGAAACAUGUAAUUUUCAUGGUUAGUUACAUUUUUAUUGUGACAUUAAGUGGUCGGCAUCACAGACCCCAUGUUCGUGUUGUUUUCAGCCAUUUUGUGGGGCCU ..((((((((((((..(....)..)))))))((((.....((((((.......)))))).....))))..)))))....(((((((((.....((((....)))).....))))))))). (-33.00 = -33.84 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:12 2006