Locus 2719

Sequence ID 3R_DroMel_CAF1
Location 7,315,196 – 7,315,309
Length 113
Max. P 0.912500
window4409

overview

Window 9

Location 7,315,196 – 7,315,309
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.49
Mean single sequence MFE -24.30
Consensus MFE -19.88
Energy contribution -19.72
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.81
Structure conservation index 0.82
SVM decision value 1.08
SVM RNA-class probability 0.912500
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7315196 113 + 27905053
UCUUCAUAUUUCACA----UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCCGGCAUUUGCCUGGUGCUAAACUCUUCCGGC--UUCCCACCAUGCACAACCCACUGCCC-CAUUCAGCUG
...............----....(((((((......(((.(((....))).)))...))))))).............((((--(.........(((........)))..-.....))))) ( -23.69)
>DroSec_CAF1 8097 115 + 1
UCUUCAUAUUUCACA----UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCCGGCAUUUGCCUGGUGCUAAGCUCUUCCGGCUCUUCUCACCCUGCACAACCCACUGCCC-CAUUCAACUG
...............----.....((((((......(((.(((....))).)))...))))))((((..((((.....))))...........))))............-.......... ( -24.32)
>DroSim_CAF1 2596 115 + 1
UCUUCAUAUUUCACA----UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCCGGCAUUUGCCUGGUGCUAAACUCUUCCGGCUCUUCUCACCCAGCACAACCCACAGCCC-CAUUCAACUG
...............----.....((((((......(((.(((....))).)))...))))))(((((........................)))))............-.......... ( -22.96)
>DroEre_CAF1 7973 114 + 1
UCUUCAUGUUUCACA----UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCAGGCAUUUGCCUGGUGCUAAACUCUUCCGGC--UUCGCACUAUUCACAUCCCACAGCCCCCUUUCAGCUG
.....((((......----.....((((((......(((((((....)))))))...))))))((((.((.((.....)).--)).)))).....))))....((((.........)))) ( -30.70)
>DroYak_CAF1 2574 117 + 1
UCUUCAUAUUUCACAUACAUAUUUCAGGCAUUUAUGGCCUGGUAUUUGCU-GGCAUUUGCCUGGUGCUAAACUCUUCCGGC--UCCGCACUAUUCACAUCCCACAGCCCCCAUUCAUCUG
.......................((((((.......)))))).....(((-(((....)))((((((..............--...))))))............)))............. ( -19.83)
>consensus
UCUUCAUAUUUCACA____UAUUUCAGGCAUUUAUGGCCUGGUAUUUGCCCGGCAUUUGCCUGGUGCUAAACUCUUCCGGC__UUCGCACCAUGCACAACCCACAGCCC_CAUUCAACUG
.......................(((((((......(((.(((....))).)))...)))))))..............(((........................)))............ (-19.88 = -19.72 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:00 2006