Locus 2718

Sequence ID 3R_DroMel_CAF1
Location 7,314,966 – 7,315,086
Length 120
Max. P 0.975360
window4408

overview

Window 8

Location 7,314,966 – 7,315,086
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.82
Mean single sequence MFE -32.50
Consensus MFE -28.66
Energy contribution -29.46
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.88
SVM decision value 1.75
SVM RNA-class probability 0.975360
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7314966 120 - 27905053
AAGUGCACACCACCGAACUAAGCACAAUUAAUAGCCCAAGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGUGGCCAUCAUCAUAUCGGGC
..((((...............))))........((((..(((..........)))..((((..(((((......))))).)))).((((.(((((....))))).)))).......)))) ( -31.36)
>DroSec_CAF1 7867 120 - 1
AAGUGCACACCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGUGGCCAUCAUCAUAUCGGGC
..((((...............))))........((((.((((((((.....((((.....))))((((......)))).......))))))))...((....))............)))) ( -33.76)
>DroSim_CAF1 2366 120 - 1
AAGUGCACACCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGUGGCCAUCAUCAUAUCGGGC
..((((...............))))........((((.((((((((.....((((.....))))((((......)))).......))))))))...((....))............)))) ( -33.76)
>DroEre_CAF1 7746 117 - 1
AAGUGCGCACCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGAACAC---AUCAUAUCGGGC
..((((...............))))........((((.((((((((.....((((.....))))((((......)))).......))))))))......((....---.)).....)))) ( -32.06)
>DroYak_CAF1 2337 117 - 1
AAGUGCGCCCCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUCAGAUUGCCAUUGCCGAACCC---AUCAUAUCGGGC
..((((...............))))........((((.(((((((......((((.....))))((((......))))........)))))))......((....---.)).....)))) ( -31.56)
>consensus
AAGUGCACACCACCGAACUAAGCACAAUUAAUAGCCCAGGCAGUCAUAACAAUGCACGGAGCAUGUGGCUCGACCCACACCUCUUUGAUUGCCAUUGCCGUGGCCAUCAUCAUAUCGGGC
..((((...............))))........((((.(((((((......((((.....))))((((......))))........)))))))...((....))............)))) (-28.66 = -29.46 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:59 2006