Locus 2716

Sequence ID 3R_DroMel_CAF1
Location 7,313,157 – 7,313,264
Length 107
Max. P 0.791630
window4406

overview

Window 6

Location 7,313,157 – 7,313,264
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.23
Mean single sequence MFE -35.68
Consensus MFE -26.82
Energy contribution -26.86
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -2.19
Structure conservation index 0.75
SVM decision value 0.59
SVM RNA-class probability 0.791630
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7313157 107 + 27905053
CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGUA------GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCUGGCACUCUC-------CAUUGUUCGCGUCGAGUAUUCAAA
....(((((((((..(((((..((((((.(((....------)))((((((.(((((((..((....))..)))))))..))).)))))-------))))...))))).))))).)))). ( -36.10)
>DroSec_CAF1 6052 107 + 1
CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCA------GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCUGGCACUCUC-------CAUUGUUCGCGUCGAGUAUUCAAA
....(((((((((..(((((..((((((.(((....------)))((((((.(((((((..((....))..)))))))..))).)))))-------))))...))))).))))).)))). ( -36.10)
>DroSim_CAF1 545 107 + 1
CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCA------GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCUGGCACUCUC-------CAUUGUUCGCGUCGAGUAUUCAAA
....(((((((((..(((((..((((((.(((....------)))((((((.(((((((..((....))..)))))))..))).)))))-------))))...))))).))))).)))). ( -36.10)
>DroEre_CAF1 5962 107 + 1
CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCA------GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUUGCAGGCACUCUC-------CAUUGUUCGCGCCGAGUAUUCAAA
....(((((((((...((((..((((((.(((....------)))(((((((..(((((..((....))..)))))...)))).)))))-------))))...))))..))))).)))). ( -33.60)
>DroYak_CAF1 555 120 + 1
CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCAGUCGCAGUCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCAGGCACUCUCCACUCGCCAUUGUUCGCGCCGAGUAUUCAAA
....(((((((((....((((.((..((((((.((....)).(..((((((((((((((..((....))..))))))).)))).)))..)....))))))..)))))).))))).)))). ( -36.50)
>consensus
CAAAUUGAUGCUUUCACGUGCAGAUGGAUGGCCGCA______GCCGAGGCCUUUAUGUAUACUUAUAGGGCUAUAUAGCUGGCACUCUC_______CAUUGUUCGCGUCGAGUAUUCAAA
....(((((((((...((((..((((...(((..........)))((((((..((((((..((....))..))))))...))).))).........))))...))))..))))).)))). (-26.82 = -26.86 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:57 2006