Locus 2715

Sequence ID 3R_DroMel_CAF1
Location 7,299,004 – 7,299,112
Length 108
Max. P 0.519408
window4405

overview

Window 5

Location 7,299,004 – 7,299,112
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 86.87
Mean single sequence MFE -27.94
Consensus MFE -17.96
Energy contribution -18.44
Covariance contribution 0.48
Combinations/Pair 1.11
Mean z-score -2.05
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.519408
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7299004 108 - 27905053
GUACA---ACUACUUAUGAAAAUCUAUGCAGAUCAAAUAAUUUUCUGCUUAUUUUCGCCCAGCAUGCCCAGCAAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA
...((---(((((((..((((((....(((((...........)))))..))))))(((((...(((...)))...))))).....)))))))))..(((......))).. ( -34.30)
>DroSec_CAF1 20067 111 - 1
AUACAAAAACUGCUUAUGAAAAUGUAUGCAUAUCAAAUAAUUUUCUGCUUAUUUUGGCCCAGCAUGCGCAGCAAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA
..........((((((.....(((....)))(((.......((((((........((((((...(((...)))...))))))))))))((((....))))))))))))).. ( -28.20)
>DroSim_CAF1 21473 108 - 1
AUACA---ACUGCUUAUGAAAAUGUAUUCAUAUCAAAUAAUUUUCUGCUUAUUUUCGCCCAGCAUGCGCAGCAAUAUGGGUCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA
...((---(((((.((((((......)))))).........((((((.........(((((...(((...)))...))))).)))))))))))))..(((......))).. ( -26.50)
>DroEre_CAF1 20515 105 - 1
AUAUG---A---CUUAUGGAAAUAUGUGCAGAUCAAAUAAUUCUCUAAUUAUUUUCGCCCAGCAUGCACAGCCAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA
.....---(---(.(((....))).))((((.............(((((((((((((((((..(((......))).)))))...))))))))))))))))........... ( -24.31)
>DroYak_CAF1 25552 105 - 1
AUAAA---A---CUUAUAGAUACAUAUGCAGCUGAAAUAUUUUUCCGCUCAUUUUCGCCCAGCAUGCACGGCAAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA
.....---.---..........((..(((((((((((....)))).(((.(((((((((((...(((...)))...)))))...))))))))).)))))))..))...... ( -26.40)
>consensus
AUACA___ACU_CUUAUGAAAAUAUAUGCAGAUCAAAUAAUUUUCUGCUUAUUUUCGCCCAGCAUGCACAGCAAUAUGGGCCCAGAAAGUAGUUGGCUGCGAUUGAGCAAA
..............................................(((((...(((((((...(((...)))...))))).......((((....)))))).)))))... (-17.96 = -18.44 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:56 2006