| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,298,332 – 7,298,426 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 7,298,332 – 7,298,426 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 85.05 |
| Mean single sequence MFE | -16.44 |
| Consensus MFE | -10.60 |
| Energy contribution | -10.47 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7298332 94 + 27905053 ACACACAGAAAGUAGAACAAGUAGAGCCAAAGCAGGAUAAAAUGGCAAAAGCAAAGAGCAGCUGGCAUGCCAUCUCUCAUUUGCUAAAUCAGAA .......................((((((.............))))...(((((((((.((.(((....))).))))).))))))...)).... ( -19.02) >DroSec_CAF1 19394 94 + 1 ACACGCAGAAAGUAGAACAACCAGAACCAAAAUAGGAUAAAAUGGCAACGGCAAAGAGCAGCUGGCAUGUCAUCUCUCAUUUGCUAAAUCAGAA ....(((((.((.(((..........((......))......(((((.((((........))))...))))))))))..))))).......... ( -16.60) >DroEre_CAF1 19854 85 + 1 ACACACAGAAACUAG---------AACUAAAGCUGGAUAAAAUGGCAACAGCAAAGAGCAGCUGGCAUGCCAUCGCUCAUUUGCUAAAUCAGAA ...............---------........((((.......(....)((((((((((.(.(((....))).))))).))))))...)))).. ( -19.80) >DroYak_CAF1 24842 85 + 1 ACACACAGAAACUAG---------AACUAAAGCUGGAUAAAAUAGCAACAGCAAAGAGCAGCUGACAUGCCAUCUCUCAUUUACUAAAUCAGAA .......((...(((---------.......((((.............))))..((((..((......))...))))......)))..)).... ( -10.32) >consensus ACACACAGAAACUAG_________AACCAAAGCAGGAUAAAAUGGCAACAGCAAAGAGCAGCUGGCAUGCCAUCUCUCAUUUGCUAAAUCAGAA .......((...(((...........((......)).....((((((.((((........))))...))))))..........)))..)).... (-10.60 = -10.47 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:55 2006