Locus 2713

Sequence ID 3R_DroMel_CAF1
Location 7,295,126 – 7,295,224
Length 98
Max. P 0.963034
window4403

overview

Window 3

Location 7,295,126 – 7,295,224
Length 98
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 67.35
Mean single sequence MFE -19.82
Consensus MFE -5.24
Energy contribution -5.43
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -2.65
Structure conservation index 0.26
SVM decision value 1.55
SVM RNA-class probability 0.963034
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7295126 98 + 27905053
CCCGACUAUGGGU-----UUUCCCUGUUUUUAAGCAUACAAAAAAUGCUGCGUAAAUAUGCCAGCAAAAAAU-----UAAAAACAAAAA--AAUUGAAGGGAAAGGAAAA
(((......)))(-----((((((((((((((((....)......(((((.(((....)))))))).....)-----))))))).....--......))))))))..... ( -20.80)
>DroPse_CAF1 15297 94 + 1
CCGG--AAGGGAAGUAUAUUUUUCU---GUUAAGUAUGCAAAAAAUGCUGCGUAAAUAUGGCAACAAAAAAG-----AAGCAACAAACA--GA----GGCAGCAGCCACA
((..--..))...((((((((....---...)))))))).......(((((.......((....))......-----..((..(.....--).----.)).))))).... ( -22.10)
>DroEre_CAF1 16716 86 + 1
CCCGACCAUGGGA-----UUUCCCUGUUUUUAAGCAUGCAAAAAAUGCUGCGUAAAUAUGCCAGCAAAAAAU-----UAA-AACAAAAA--AA----G-------GAAAA
(((......))).-----(((((.((((....)))).........(((((.(((....))))))))......-----...-........--..----)-------)))). ( -16.00)
>DroYak_CAF1 21584 94 + 1
CCCGACCAUGGGA-----UUUCCCUGUUUUUAAGCAUGCAAAAAAUGCUGCGUAAAUAUGCCAGUAAAAAAU-----UAAAAACAAAAA--AA----GGGGAAAAGAAAA
(((......(((.-----...)))(((((((((((((.......)))))((((....))))...........-----))))))))....--..----))).......... ( -21.60)
>DroAna_CAF1 16294 100 + 1
CUCAGCCAUGGCA-----U----CCUUUUUUAAGGAUGUAAA-AAUGCUGCGUAAAUAUGCCAGCAAAAAAUGUAUGUAAAAUGAAAAAAAAACAACAUCGAAGAGAGCA
(((..(.((((((-----(----((((....))))))))...-..(((((.(((....))))))))..............................))).)..))).... ( -22.70)
>DroPer_CAF1 16034 87 + 1
CUGG--AAUGGCAGUAUCUUUUUCU---GUUAAGUAUGCAAAAAAUGCUGCGUAAAUAUGGCAACAAAAAAG-----AAGCAACAAACA--GC----GGCAGC-------
(((.--..((...((.(((((((.(---((((..((((((........))))))....)))))...))))))-----).))..))..))--).----......------- ( -15.70)
>consensus
CCCGACCAUGGGA_____UUUCCCUGUUUUUAAGCAUGCAAAAAAUGCUGCGUAAAUAUGCCAGCAAAAAAU_____UAAAAACAAAAA__AA____GGCGAAA_GAAAA
.............................................((((((((....))).)))))............................................ ( -5.24 =  -5.43 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:54 2006