Locus 271

Sequence ID 3R_DroMel_CAF1
Location 1,064,279 – 1,064,399
Length 120
Max. P 0.720156
window469

overview

Window 9

Location 1,064,279 – 1,064,399
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -45.12
Consensus MFE -27.29
Energy contribution -27.60
Covariance contribution 0.31
Combinations/Pair 1.34
Mean z-score -2.08
Structure conservation index 0.60
SVM decision value 0.40
SVM RNA-class probability 0.720156
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1064279 120 - 27905053
GGUGAACUGCCGAAGGAGUUUGACUGGAGGCAGAAGGAUGCUGUCACCCAGGUGAAGAAUCAGGGAUCCUGCGGUUCAUGCUGGGCCUUCAGUGUGACCGGCAACAUCGAAGGCCUGUAC
.(((((((((...((((...((((....((((......))))))))(((.(((.....))).))).)))))))))))))((.((((((((.((((........)))).)))))))))).. ( -46.90)
>DroVir_CAF1 675 120 - 1
GGUGAGCUGCCCAAGGAAUUUGACUGGCGGCAAAAGAAUGCAGUUACGCAUGUCAAGAACCAGGGACAGUGCGGCUCCUGUUGGGCAUUCAGUGUGACCGGCAACAUUGAGGGUGCUUAU
.((((((((((((((((...((((((.((.........))))))))((((((((..........)))).))))..))))..))))))((((((((........))))))))...)))))) ( -40.70)
>DroGri_CAF1 670 120 - 1
GGUGAGAUGCCCAAGGAGUUUGACUGGCGGCAAAAGAAGGCUGUGACGCAUGUCAAGAAUCAAGGACAAUGCGGCUCCUGCUGGGCAUUCAGUGUUACAGGCAACAUUGAGGGCUUGUAU
(.((((.((((((((((((.......(((((........)))))..((((((((..........))).)))))))))))..)))))))))).)..(((((((..........))))))). ( -42.80)
>DroYak_CAF1 667 120 - 1
GGUGAACUGCCAAAGGAAUUUGACUGGCGGCAGAAGAAUGCUGUCACCCAGGUAAAAAACCAGGGAUCCUGCGGUUCAUGCUGGGCGUUUAGUGUGACGGGAAACAUUGAAGGUCUGCAC
.(((((((((...((((.......((((((((......))))))))(((.(((.....))).))).)))))))))))))((.((((.((((((((........)))))))).)))))).. ( -50.10)
>DroMoj_CAF1 691 120 - 1
GGUGAACUGCCCAAGGAAUUCGACUGGAGGGAAAAGAAUGCCGUGACGCAAGUCAAGAACCAAGGCUCGUGCGGCUCCUGCUGGGCAUUCAGCGUGACCGGCAACAUCGAAGGCUUGUAU
(((.....)))((((...(((((.((..((((.......((((((((....)))..((.(....).))..)))))))))(((((.(((.....))).)))))..)))))))..))))... ( -37.01)
>DroAna_CAF1 672 120 - 1
GGGGAGCUGCCCAAGGAGUUCGAUUGGAGGUCCAAGAAUGCCGUCACCGGAGUGAAGAACCAGGGACAGUGCGGCUCGUGCUGGGCCUUCAGUGUGACGGGCAACAUUGAGGGCCUGUAC
...(((((((.(..((.((((...(((....))).)))).))(((.((.(.((.....))).))))).).)))))))((((.(((((((((((((........))))))))))))))))) ( -53.20)
>consensus
GGUGAACUGCCCAAGGAAUUUGACUGGAGGCAAAAGAAUGCUGUCACCCAAGUCAAGAACCAGGGACAGUGCGGCUCCUGCUGGGCAUUCAGUGUGACCGGCAACAUUGAAGGCCUGUAC
...((((((((....).......((((.((((......)))).((((....))))....)))).......))))))).(((.((((.((((((((........)))))))).))))))). (-27.29 = -27.60 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:10 2006