Locus 2709

Sequence ID 3R_DroMel_CAF1
Location 7,282,095 – 7,282,190
Length 95
Max. P 0.909015
window4399

overview

Window 9

Location 7,282,095 – 7,282,190
Length 95
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 77.40
Mean single sequence MFE -19.23
Consensus MFE -10.34
Energy contribution -12.46
Covariance contribution 2.12
Combinations/Pair 1.06
Mean z-score -2.38
Structure conservation index 0.54
SVM decision value 1.06
SVM RNA-class probability 0.909015
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7282095 95 + 27905053
AGAGUGUCAGGAAUUACUCACACA-CUCACGCUGGCACUCACACUGGCACUCAAACUCGUACUCACACUCACACUCACACCGAGUGCUGGAAUGCA
.(((((((((..............-......)))))))))...(..((((((.............................))))))..)...... ( -24.90)
>DroSec_CAF1 3428 77 + 1
AGAGUGGCAGGAAUUACUCACACA-CUC------------ACACUGGCACUCAAACUCGCACUCACACUCACACC------GAGUUCUGGAAUGCA
.(((((.(((..............-...------------...))).)))))......(((.((..((((.....------))))....)).))). ( -20.35)
>DroSim_CAF1 7372 76 + 1
AGAGUGGCAGGAAUUACUCACACA-CUC------------ACACUGGCACUCAAACUCGCACUCACACUCACACU------CA-CACUGGAAUGCA
.(((((.(((..............-...------------...))).)))))......(((.((.((........------..-...)))).))). ( -15.37)
>DroEre_CAF1 3399 81 + 1
AGAGUGGCAGGAAUUACUCACACUC---------ACACUCACAGUGGCACUCAAACUCACAUUCGCACUCACACC------GACUGGUGGAAUACA
.(((((..((......))..)))))---------.(((.....)))......................((.((((------....))))))..... ( -16.30)
>consensus
AGAGUGGCAGGAAUUACUCACACA_CUC____________ACACUGGCACUCAAACUCGCACUCACACUCACACC______GAGUGCUGGAAUGCA
.(((((.(((.................................))).)))))......(((.((.(((((...........)))))...)).))). (-10.34 = -12.46 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:50 2006