| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,277,999 – 7,278,118 |
| Length | 119 |
| Max. P | 0.536362 |
| Location | 7,277,999 – 7,278,118 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.30 |
| Mean single sequence MFE | -30.70 |
| Consensus MFE | -24.53 |
| Energy contribution | -24.43 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7277999 119 - 27905053 AAUGCUGUUAGAUAGACGGACGGACGGACAGCAAAAAAAAAAAAAAGAAUAGCAAUGGCCCGUUUAAGCGGAAAUUUCUCGGCUAUUUU-GUGUGCGCGGGAAUGUUUGCCGUUCAAUUU ..(((((((.....(.....).....))))))).............(((..((((....((((....))))....((((((((......-....)).))))))...))))..)))..... ( -28.70) >DroSim_CAF1 3262 113 - 1 AAUGCUGUUAGAUG----GACAAACGGCCAGCAAAAAAAGAAAA---AAUUGCAAUGGCCCGUUUAAGCGGAAAUUUCUCGGCUAUUUUGGUGUGCGCGGGAAUGUUUGCCGUUUAAUUU ......((((((((----(.((((((((((((((..........---..))))..)))))(((....))).....(((((((((((....))).)).)))))).)))))))))))))).. ( -33.40) >DroYak_CAF1 4279 107 - 1 AAUGCUGUUAGAUGGACGG--GGAUGGACGGCAAAAA----------AAUUGCAACGGCUCGUUUAAGCGAAAAAUUCUCGGAUAUUUU-GUGUGCGCGGGAAUGUUUGCCGUUCAAUGU ..(.(((((.....)))))--.).(((((((((((..----------..((((((((...))))...))))...(((((((..(((...-..)))..))))))).))))))))))).... ( -30.00) >consensus AAUGCUGUUAGAUGGACGGACGGACGGACAGCAAAAAAA_AAAA___AAUUGCAAUGGCCCGUUUAAGCGGAAAUUUCUCGGCUAUUUU_GUGUGCGCGGGAAUGUUUGCCGUUCAAUUU ..(((((((.................)))))))...............((((.((((((((((....))))....((((((((...........)).)))))).....)))))))))).. (-24.53 = -24.43 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:47 2006