Locus 2706

Sequence ID 3R_DroMel_CAF1
Location 7,277,443 – 7,277,563
Length 120
Max. P 0.757077
window4395

overview

Window 5

Location 7,277,443 – 7,277,563
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -35.73
Consensus MFE -30.72
Energy contribution -31.83
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -2.33
Structure conservation index 0.86
SVM decision value 0.49
SVM RNA-class probability 0.757077
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7277443 120 - 27905053
GAUACGCACUGAUCAAACGAUCGAUCGAUCGAUUGCACCGCUCCACCGAAAUGUGGAGCACACGCGAGUGAAACGGGGAAGCAACCACUUGGUAGACAAUGUAAAUAUUGAAAGCGAUUC
....(((.((.(((((.(((((....))))).((((.(((((((((......))))))).(((....))).....))...))))....))))))).(((((....)))))...))).... ( -38.70)
>DroSim_CAF1 2501 120 - 1
GAUACGCACUGAUCAAACGAUCGAUCGAUCGAUUGCACCGCUCCACCGAAAUGUGGAACACACGCGAGUGAAACGGGGAAGCAACCACUUGGUAGACAAUGUAAAUAUUGAAAGCGAUUC
....(((.((.(((((.(((((....))))).((((.(((.(((((......)))))...(((....)))...)))....))))....))))))).(((((....)))))...))).... ( -32.60)
>DroYak_CAF1 3166 120 - 1
GAUACGCACCGAUCAAGCGAUCGAUCGAUCGAUUGCACCGCUCCCCCAAAAUGUCAAGCACACACGAGUGAAACGGGGAAGCAACCACUUGGUAGACAAUGUAAAUAUUGAAAGCGAUUC
....((((((((....((((((((....))))))))...(((.((((....((.....))(((....)))....)))).)))......)))))...(((((....)))))...))).... ( -35.90)
>consensus
GAUACGCACUGAUCAAACGAUCGAUCGAUCGAUUGCACCGCUCCACCGAAAUGUGGAGCACACGCGAGUGAAACGGGGAAGCAACCACUUGGUAGACAAUGUAAAUAUUGAAAGCGAUUC
....((((((((.....(((((....))))).((((.(((((((((......))))))).(((....))).....))...))))....)))))...(((((....)))))...))).... (-30.72 = -31.83 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:46 2006