| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,277,082 – 7,277,184 |
| Length | 102 |
| Max. P | 0.994760 |
| Location | 7,277,082 – 7,277,184 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.02 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -15.45 |
| Energy contribution | -17.57 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.994760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7277082 102 - 27905053 CACGGGCCACAUAGCCAAUAGCCGGCUAUUAAUAAUUCCAUUGAACUGCACCUGCCAUAAGGUCAAUUGGAUCCGCCGCGGAUCCG----C--------------CCCAUAUCCCCCCAA ...((((...((((((.......)))))).................((.((((......))))))...(((((((...))))))))----)--------------))............. ( -29.50) >DroSim_CAF1 2157 102 - 1 CAUGGGCCACAUAGCCAAUAGCCGGCUAUUAAUAAUUCCAUUGAACUGCACCUGCCAUAAGGUCAAUCGGAUCCGCCGUGGAUCCG----C--------------CCCAUACCCCCCCAA ...((((...((((((.......)))))).................((.((((......))))))...((((((.....)))))))----)--------------))............. ( -28.30) >DroYak_CAF1 2783 112 - 1 -AUGGGCCACAUA-------GCCGGCUAUUAAUAAUUCCAUCGAACUGCACCUGCCAUAAGGUCAAUCGAAUCCGCCAUGCCACCCAUACCCCUAUACCCCUAUACCCACAUACCCGCAU -(((((...(((.-------((.((............)).((((..((.((((......)))))).))))....)).)))...)))))................................ ( -17.50) >consensus CAUGGGCCACAUAGCCAAUAGCCGGCUAUUAAUAAUUCCAUUGAACUGCACCUGCCAUAAGGUCAAUCGGAUCCGCCGUGGAUCCG____C______________CCCAUAUCCCCCCAA ...(((....((((((.......)))))).................((.((((......))))))...(((((((...)))))))....................)))............ (-15.45 = -17.57 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:45 2006