Locus 2703

Sequence ID 3R_DroMel_CAF1
Location 7,275,893 – 7,276,013
Length 120
Max. P 0.817074
window4390

overview

Window 0

Location 7,275,893 – 7,276,013
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -34.77
Consensus MFE -31.34
Energy contribution -31.23
Covariance contribution -0.11
Combinations/Pair 1.05
Mean z-score -2.19
Structure conservation index 0.90
SVM decision value 0.67
SVM RNA-class probability 0.817074
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7275893 120 - 27905053
GUCGGUUAUUCUUGCAAUGGAAGUUUGACUGUAUUUCUAAGUAUAAUUUUUAUUUGCAUGUCAUGUUUAAUUAACGCCUCCAUGCAGGAAAGACCGAGAAAGUGUUCGUCGCUCCGGCCA
.((((((.((((((((.((((.((.((((((((..(..((((...))))..)..)))).)))).(((.....))))).)))))))))))).))))))...((((.....))))....... ( -33.00)
>DroSim_CAF1 978 120 - 1
GUCCGUUAUUCCUGCAAUGGAAGUUUGACUGUAUUUCUAAGUAUAAUUUUUAUUUGCAUGUCAUGUUUAAUUAACGCCUCCAUGCAGGAAAGACCGAGAAAGUGUUCGUCGCUACGGCCA
(.((((..((((((((.((((.((.((((((((..(..((((...))))..)..)))).)))).(((.....))))).)))))))))))).(((.(((......))))))...)))).). ( -31.50)
>DroYak_CAF1 1577 120 - 1
GUCGGUUAUUCUUGCAAUGGAGGGUGGACUGUAUUUCUAAGUAUAAUUUUUAUUUGCAUGUCAUGUUUAAUUAACGCCUCCAUGCAGGAAAGACCGAGAAAGCGUUCGUCGCUCUGGCCA
.((((((.((((((((.((((((...(((((((..(..((((...))))..)..)))).)))..(((.....))).)))))))))))))).))))))...((((.....))))....... ( -39.80)
>consensus
GUCGGUUAUUCUUGCAAUGGAAGUUUGACUGUAUUUCUAAGUAUAAUUUUUAUUUGCAUGUCAUGUUUAAUUAACGCCUCCAUGCAGGAAAGACCGAGAAAGUGUUCGUCGCUCCGGCCA
.((((((.((((((((.((((.....(((((((..(..((((...))))..)..)))).)))..(((.....)))...)))))))))))).))))))...((((.....))))....... (-31.34 = -31.23 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:42 2006