Locus 2701

Sequence ID 3R_DroMel_CAF1
Location 7,275,540 – 7,275,656
Length 116
Max. P 0.748659
window4387

overview

Window 7

Location 7,275,540 – 7,275,656
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.76
Mean single sequence MFE -27.33
Consensus MFE -25.70
Energy contribution -25.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.94
SVM decision value 0.47
SVM RNA-class probability 0.748659
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7275540 116 - 27905053
UUGUGAAACGAGCCAGUUGAAUAAAAACAAAACAAAGUGAAUGGA---AA-AAAAGGCGAAAGACGAAAGCGCCAGAGAUAUGUAUGUUUCCUUUUAUUCUUUCGAUUUGGUUCCGUUUU
....(((((((((((((((((.....((........))(((((((---(.-....((((.....(....))))).((((((....)))))).)))))))).))))).)))))).)))))) ( -27.10)
>DroSim_CAF1 626 117 - 1
UUGUGAAACGAGCCAGUUGAAUAAAAACAAAACAAAGUGAAUGGA---AAAAAAAGGCGAAAGACGAAAGCGCCAGAGAUAUGUAUGUUUCCUUUUAUUCUUUCGAUUUGGUUCCGUUUU
....(((((((((((((((((.....((........))(((((((---(......((((.....(....))))).((((((....)))))).)))))))).))))).)))))).)))))) ( -27.10)
>DroYak_CAF1 1232 120 - 1
UUGUGAAACGAGCCAGUUGAAUAAAAACAAAACAAAGUGAAUGGAUAGAAAAAAAGGCGAAAGACGAAAGCGCCAGAGAUAUGUAUGUUUCCUUUUAUUCUUUCGAUUUGGUUCCGUUUU
....((((((((((((((.......))).........((((.((((((((.....((((.....(....))))).((((((....)))))).)))))))).))))...))))).)))))) ( -27.80)
>consensus
UUGUGAAACGAGCCAGUUGAAUAAAAACAAAACAAAGUGAAUGGA___AAAAAAAGGCGAAAGACGAAAGCGCCAGAGAUAUGUAUGUUUCCUUUUAUUCUUUCGAUUUGGUUCCGUUUU
....(((((((((((((((((.....((........))(((((((..........((((.....(....))))).((((((....))))))..))))))).))))).)))))).)))))) (-25.70 = -25.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:39 2006