Locus 2700

Sequence ID 3R_DroMel_CAF1
Location 7,270,002 – 7,270,101
Length 99
Max. P 0.763388
window4386

overview

Window 6

Location 7,270,002 – 7,270,101
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 95.96
Mean single sequence MFE -25.67
Consensus MFE -22.38
Energy contribution -22.88
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.87
SVM decision value 0.51
SVM RNA-class probability 0.763388
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7270002 99 - 27905053
UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA
((((..((((((((....))))))))..))))...((((.((((.(((..((((((......))))))..))).)))).))))................ ( -24.70)
>DroSec_CAF1 6762 99 - 1
UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA
((((..((((((((....))))))))..))))...((((.((((.(((..((((((......))))))..))).)))).))))................ ( -24.70)
>DroSim_CAF1 8654 99 - 1
UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA
((((..((((((((....))))))))..))))...((((.((((.(((..((((((......))))))..))).)))).))))................ ( -24.70)
>DroEre_CAF1 6745 99 - 1
UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAAUAA
...(((((.((((((((.((..(((((..((((....(....).)))).)))))..)).)))..)))))....(((((........)))))..))))). ( -27.00)
>DroYak_CAF1 6906 99 - 1
UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA
((((..((((((((....))))))))..))))...((((.((((.(((..((((((......))))))..))).)))).))))................ ( -24.70)
>DroAna_CAF1 7460 97 - 1
CAAUAUUGGCCAAUGGCUGUUGGCCAUAAUUAUACUGGGCGACAGUGAAAUGGUUGACUGCAUAAUUGGAUUAGAGUCCCC--GACGCUGGCAAAACAA
........((((.((((.((..(((((.....(((((.....)))))..)))))..)).))......((((....))))..--..)).))))....... ( -28.20)
>consensus
UAAUAUUGGCCAAUUGCUGUUGGCCAUAAUUAUACUGGGCGACAAUGAAAUGGUUGACUGCAUAAUUGGAUUAGUGUCCCCCAAACGACGCCACAACAA
......((((((((....)))))))).........((((.((((.(((..((((((......))))))..))).)))).))))................ (-22.38 = -22.88 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:38 2006