Locus 270

Sequence ID 3R_DroMel_CAF1
Location 1,061,890 – 1,061,983
Length 93
Max. P 0.985700
window468

overview

Window 8

Location 1,061,890 – 1,061,983
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 88.71
Mean single sequence MFE -16.20
Consensus MFE -14.51
Energy contribution -14.32
Covariance contribution -0.19
Combinations/Pair 1.19
Mean z-score -2.40
Structure conservation index 0.90
SVM decision value 2.02
SVM RNA-class probability 0.985700
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1061890 93 - 27905053
UUUCUUAACAUCUUAAACUUUAAUACAUUUGCGCAUAAACGUUCGUAAAUGUAUCUAAGUAAUAUAAAAUGCAUACAAUUUCGCGUUUACUUU
................((((..(((((((((((.((....)).)))))))))))..))))......((((((..........))))))..... ( -18.20)
>DroSec_CAF1 34187 93 - 1
UUUCCUAACUUCUUAAACUUUAAUACAUUUGCGCAAAAACGUUUGUAAAUGUAUCUAAGUAAUAUAAAAUGCAUACAAUUUCGCGUUUACUUU
................((((..((((((((((((......))..))))))))))..))))......((((((..........))))))..... ( -16.10)
>DroSim_CAF1 34278 93 - 1
UUUCCUAACUUCUUAAACUUUAAUACAUUUGCGCAAAAACGUUUGUAAAUGUAUCUAAGUAAUAUAAAAUGCAUACAAUUUCGCGUUUACUUU
................((((..((((((((((((......))..))))))))))..))))......((((((..........))))))..... ( -16.10)
>DroYak_CAF1 34235 92 - 1
UUUCCUAACUUUUUAAUCUUAAAUAGAUUUGAGUCAAUACAUUUGUAAGUGUAUUUAAGAAAUAUACAACGCAUAGAAUUUCGCGUUUACUG-
................(((((((((.(((((...(((.....)))))))).))))))))).......(((((..........))))).....- ( -14.40)
>consensus
UUUCCUAACUUCUUAAACUUUAAUACAUUUGCGCAAAAACGUUUGUAAAUGUAUCUAAGUAAUAUAAAAUGCAUACAAUUUCGCGUUUACUUU
................((((..(((((((((((..........)))))))))))..))))......((((((..........))))))..... (-14.51 = -14.32 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:09 2006