| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,264,118 – 7,264,216 |
| Length | 98 |
| Max. P | 0.842676 |
| Location | 7,264,118 – 7,264,216 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 74.55 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -7.55 |
| Energy contribution | -7.08 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7264118 98 + 27905053 CAAU-ACUACAU--UACAAU--------U--UGUACU-CACUUGAGGAUACUCUGGUUCUUCUUCAUGGCUUGCUUGAGGGCGUCCUUCUCCUUCUUGGCCGCCUCCUCUUU ....-..((((.--......--------.--))))..-.....(((((..(((.(((...((.....))...))).)))((((.((...........)).)))))))))... ( -21.80) >DroVir_CAF1 648 101 + 1 CAAA-UUCACUA--UAAUAUU--UGG-C-----CGCUCUACUUGAGUAUAACAUGAUUCUUCUUCAUGGCUUGCUUCAGUGCAUCCUUCUCUUUCUUGGCGGCCUCCUCCUU ....-.......--.......--.((-(-----((((......(((.....(((((.......)))))(..(((......)))..)..)))......)))))))........ ( -24.20) >DroGri_CAF1 597 107 + 1 CAUUUUUGCCUA--GGAUAUU--UCAUCUGCUACACU-UACUUGAGUAGAACAUGAUUCUUCUUCAUGGCCUGCUUGAGCACAUCCUUCUCCUUCUUGGCUGCCUCCUCCUU .......(((.(--(((....--.(....).......-..((..(((((..(((((.......)))))..)))))..))..........))))....)))............ ( -22.70) >DroSec_CAF1 516 98 + 1 UAAU-ACUACAC--AACAAU--------U--UUUACU-CACUUGAGGAUGCCUUGGUUCUUCUUCAUGGCUUGCUUGAGGGCGUCCUUCUCCUUCUUGGCCGCCUCCUCUUU ....-.......--......--------.--......-..((..((.(.(((.(((.......))).))).).))..))((((.((...........)).))))........ ( -21.80) >DroSim_CAF1 517 100 + 1 UAAU-ACUACACAUAACAAU--------U--UCUACU-CACUUGAGGAUGCCCUGGUUCUUCUUCAUGGCUUGCUUGAGGGCGUCCUUCUCCUUCUUGGCCGCCUCCUCUUU ....-...............--------.--......-..((..((.(.(((.(((.......))).))).).))..))((((.((...........)).))))........ ( -21.80) >DroMoj_CAF1 599 102 + 1 CGAA-AGCAUGU--CUUUAUUUAUAA-A-----UGCU-UACUUGAGUAUAACAUGAUUCUUCUUCAUGGCUUGCUUCAGCGCAUCCUUCUCCUUCUUGGCCGCCUCCUCCUU .(((-.(((.((--............-(-----((((-(....))))))..(((((.......))))))).)))))).(((...((...........)).)))......... ( -16.80) >consensus CAAU_ACUACAA__AACAAU________U__U_UACU_CACUUGAGGAUAACAUGAUUCUUCUUCAUGGCUUGCUUGAGGGCAUCCUUCUCCUUCUUGGCCGCCUCCUCCUU ...........................................(((.......(((.......))).(((.(((......))).......((.....))..)))..)))... ( -7.55 = -7.08 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:35 2006