Locus 2696

Sequence ID 3R_DroMel_CAF1
Location 7,257,546 – 7,257,653
Length 107
Max. P 0.661208
window4381

overview

Window 1

Location 7,257,546 – 7,257,653
Length 107
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 68.86
Mean single sequence MFE -26.79
Consensus MFE -14.71
Energy contribution -16.40
Covariance contribution 1.69
Combinations/Pair 1.16
Mean z-score -1.52
Structure conservation index 0.55
SVM decision value 0.27
SVM RNA-class probability 0.661208
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7257546 107 + 27905053
AC-AUCGCAUGCGCUCG---CCAGUUUGCACCAGCUGUUGCGCCAGCUGAUCGCCCGCUCAUGCGCUGGUCACACCGCCAGCAUCCAAACAAA--CAGAGCAGCAGACCAAGA
..-......(((((((.---...(((((...((((((......)))))).......((....))((((((......))))))...)))))...--..)))).)))........ ( -33.30)
>DroEre_CAF1 1722 93 + 1
ACCAUC---------------CAGUUCGCAUCAGCUGUUGCGCCAGCUGAUCUCCCGCUGCCGCGCUGGUCACACCGCUAGCAUCCAAACAAA--CCGAG---CAGACCCAGA
......---------------..(((((.((((((((......)))))))).....((((..(((.((....)).)))))))...........--.))))---)......... ( -25.50)
>DroYak_CAF1 1690 90 + 1
AC-AUC-----------------GUUCGCAUCAGCUGUUGCGCCAGCUGAUAGCCCGCUGCUGCACUGGUCACACCGCCAGCAUCCAAACAAA--CCGAG---CAGACCCAGA
..-...-----------------((((((((((((((......)))))))).))....(((((...(((.....))).)))))..........--..)))---)......... ( -26.10)
>DroAna_CAF1 1742 107 + 1
A---ACAUAUCCGCCUGAUUCCACUUGCAAACAGCUGAUGCAACAGCUGAUGUAUCUGUGAAACCCUGGUCACACUUCCAGCAUCCAAACAAUAUCUUCG---CAGACUCGAA
.---((((....((..(......)..))...((((((......)))))))))).((((((((...((((........))))...............))))---))))...... ( -22.27)
>consensus
AC_AUC_______________CAGUUCGCAUCAGCUGUUGCGCCAGCUGAUCGCCCGCUGAUGCGCUGGUCACACCGCCAGCAUCCAAACAAA__CCGAG___CAGACCCAGA
.....................((((..((((((((((......)))))))).))..))))....(((((........)))))............................... (-14.71 = -16.40 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:33 2006