| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,242,303 – 7,242,416 |
| Length | 113 |
| Max. P | 0.805122 |
| Location | 7,242,303 – 7,242,416 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.81 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -15.90 |
| Energy contribution | -14.90 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7242303 113 - 27905053 GAACACGUCUUAAUAUACUGCGAAUCC-ACAGGGACAUUUUUCCGCUCUAUCGGAUCUCGUACAUGUGGUACACCACGUUCGGUGCCUCCAUUACGAUUUUCGUGGCAUUGCUA ...................((((..((-((.((((.....))))........(((..(((((...((((..((((......))))...)))))))))..)))))))..)))).. ( -28.80) >DroPse_CAF1 3753 109 - 1 C----UAUUUUAAU-UCCUUUUAUUCGAAAAGGGAUAUCUUCCCAUUGUACCGCAUCUCGUACAUGUGGUACACGACCUUUGGCGCUUCGAUUACCAUUAUUGUGGCGCUGCUC .----.........-.........(((....((((.....))))..((((((((((.......))))))))))))).....((((((.((((.......)))).)))))).... ( -32.40) >DroSec_CAF1 4085 113 - 1 GAACACAUCUUAAUAUACUCUGAAUCG-ACAGGGACAUUUUUCCGCUCUAUCGGAUCUCGUACAUGUGGUACACCACGUUCGGGGCCUCCAUUACGAUUAUCGUGGCGCUGCUG .................(((((.....-.))))).........(((......((((((((...((((((....)))))).)))))..)))..((((.....)))))))...... ( -26.20) >DroEre_CAF1 3962 113 - 1 GAGCACUUCCUAUCACUCUCCAAACCU-ACAGGGACAUUUUUCCGCUCUAUCGCAUCUCGUACAUGUGGUACACCACUUUUGGUGCCUCCAUUACGAUAAUCGUGGCACUGCUG .((((......................-...((((.....))))(((....((....(((((...((((..(((((....)))))...)))))))))....)).)))..)))). ( -23.50) >DroYak_CAF1 3978 113 - 1 AAGCAUUUUCUACGAUUCUCCAAAUCU-AUAGGGAAAUUUUUCCACUCUAUCGGAUCUCGUACAUGUGGUACACCACUUUCGGUGCCUCCAUUACGAUUAUCGUGGCACUGCUG .((((....(((((((.......((((-((((((...........)))))).)))).(((((...((((..((((......))))...)))))))))..)))))))...)))). ( -29.60) >DroPer_CAF1 3748 109 - 1 C----UAUUUUAAU-UUCUUUUAUUCGAAAAGGGAUAUCUUCCCAUUGUACCGCAUCUCGUACAUGUGGUACACGACCUUUGGCGCUUCGAUUACCAUUAUUGUGGCGCUGCUC .----.........-.........(((....((((.....))))..((((((((((.......))))))))))))).....((((((.((((.......)))).)))))).... ( -32.40) >consensus GA_CACAUCUUAAUAUUCUCCAAAUCG_ACAGGGACAUUUUUCCACUCUAUCGCAUCUCGUACAUGUGGUACACCACCUUCGGUGCCUCCAUUACGAUUAUCGUGGCACUGCUG ...............................((((.....))))...............((((.....))))........(((((((.................)))))))... (-15.90 = -14.90 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:25 2006