Locus 2687

Sequence ID 3R_DroMel_CAF1
Location 7,222,900 – 7,222,995
Length 95
Max. P 0.998400
window4361 window4362

overview

Window 1

Location 7,222,900 – 7,222,995
Length 95
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 86.85
Mean single sequence MFE -27.28
Consensus MFE -25.48
Energy contribution -24.85
Covariance contribution -0.64
Combinations/Pair 1.15
Mean z-score -3.13
Structure conservation index 0.93
SVM decision value 3.09
SVM RNA-class probability 0.998400
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7222900 95 + 27905053
AUCUUUCUUUAAAACAAACUGCAAUAGAGCAGCACACAGUGCGUAUAC--UUUCGGCAUGCACUGUGUGCCUGCACCA-AUGGACUUAGUUAAACAAU
................(((((.......((((((((((((((((...(--....)..)))))))))))).)))).((.-..))...)))))....... ( -27.80)
>DroPse_CAF1 89804 98 + 1
AUUUUCUGUUCCAACAAACUGCAAUAGAGCAGCGCACGGUGCCCAUACAGUUUCGGCCCGCACUGUGCGCCUGCACCAAACGGAUUAAGUUCAACAAA
....((((((.((......)).))))))((((((((((((((((..........))...)))))))))).)))).((....))............... ( -30.70)
>DroSec_CAF1 54751 95 + 1
AUCUUUCUUUAAAACAAACUGCAAUAGAGCAGCACACAGUGCGUAUAC--UUUCGGCAUGCACUGUGUGUUUGCACCA-AUGGACUUAGUUAAACAAU
................(((((.......((((((((((((((((...(--....)..)))))))))))).)))).((.-..))...)))))....... ( -25.40)
>DroEre_CAF1 59834 95 + 1
AUCUUUAUUUAAAACAAACUGCAAUAGAGCAGCACACAGUGCGUAUAC--UUUCGGCAUGCACUGUGUACCUGCACCA-AUGGACUUAGUUAAACAAU
................(((((.......((((.(((((((((((...(--....)..)))))))))))..)))).((.-..))...)))))....... ( -23.10)
>DroYak_CAF1 60199 95 + 1
AUCUUUAUUUACAACAAACUGCAAUAGAGCAGCACACAGUGCGAAUAC--UUUCGGCAUGCACUGUGUGCCUGCACCA-AUGGACUUAGUUAAACAAU
................(((((.......(((((((((((((((....(--....)...))))))))))).)))).((.-..))...)))))....... ( -26.00)
>DroPer_CAF1 92887 98 + 1
AUUUUCUGUUCCAACAAACUGCAAUAGAGCAGCGCACGGUGCCCAUACAGUUUCGGCCCGCACUGUGCGCCUGCACCAAACGGAUUAAGUUCAACAAA
....((((((.((......)).))))))((((((((((((((((..........))...)))))))))).)))).((....))............... ( -30.70)
>consensus
AUCUUUAUUUAAAACAAACUGCAAUAGAGCAGCACACAGUGCGUAUAC__UUUCGGCAUGCACUGUGUGCCUGCACCA_AUGGACUUAGUUAAACAAU
................((((........((((((((((((((.................)))))))))).)))).((....))....))))....... (-25.48 = -24.85 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 7,222,900 – 7,222,995
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 86.85
Mean single sequence MFE -31.80
Consensus MFE -24.76
Energy contribution -24.79
Covariance contribution 0.03
Combinations/Pair 1.12
Mean z-score -2.94
Structure conservation index 0.78
SVM decision value 0.69
SVM RNA-class probability 0.824048
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7222900 95 - 27905053
AUUGUUUAACUAAGUCCAU-UGGUGCAGGCACACAGUGCAUGCCGAAA--GUAUACGCACUGUGUGCUGCUCUAUUGCAGUUUGUUUUAAAGAAAGAU
.((.((((((.((.(.((.-(((.((((.(((((((((((((.(....--))))..)))))))))))))).))).)).).)).))..)))).)).... ( -31.60)
>DroPse_CAF1 89804 98 - 1
UUUGUUGAACUUAAUCCGUUUGGUGCAGGCGCACAGUGCGGGCCGAAACUGUAUGGGCACCGUGCGCUGCUCUAUUGCAGUUUGUUGGAACAGAAAAU
((((((........(((((...((((....))))...)))))(((((((((((.(((((.(....).)))))...)))))))..)))))))))).... ( -32.80)
>DroSec_CAF1 54751 95 - 1
AUUGUUUAACUAAGUCCAU-UGGUGCAAACACACAGUGCAUGCCGAAA--GUAUACGCACUGUGUGCUGCUCUAUUGCAGUUUGUUUUAAAGAAAGAU
.((.(((((((((.....)-))))((((((((((((((((((.(....--))))..))))))))))((((......)))))))))..)))).)).... ( -28.40)
>DroEre_CAF1 59834 95 - 1
AUUGUUUAACUAAGUCCAU-UGGUGCAGGUACACAGUGCAUGCCGAAA--GUAUACGCACUGUGUGCUGCUCUAUUGCAGUUUGUUUUAAAUAAAGAU
.(((((((((.((.(.((.-(((.((((.(((((((((((((.(....--))))..)))))))))))))).))).)).).)).))..))))))).... ( -31.60)
>DroYak_CAF1 60199 95 - 1
AUUGUUUAACUAAGUCCAU-UGGUGCAGGCACACAGUGCAUGCCGAAA--GUAUUCGCACUGUGUGCUGCUCUAUUGCAGUUUGUUGUAAAUAAAGAU
.(((((((((.((.(.((.-(((.((((.(((((((((((((.(....--))))..)))))))))))))).))).)).).)).))..))))))).... ( -33.60)
>DroPer_CAF1 92887 98 - 1
UUUGUUGAACUUAAUCCGUUUGGUGCAGGCGCACAGUGCGGGCCGAAACUGUAUGGGCACCGUGCGCUGCUCUAUUGCAGUUUGUUGGAACAGAAAAU
((((((........(((((...((((....))))...)))))(((((((((((.(((((.(....).)))))...)))))))..)))))))))).... ( -32.80)
>consensus
AUUGUUUAACUAAGUCCAU_UGGUGCAGGCACACAGUGCAUGCCGAAA__GUAUACGCACUGUGUGCUGCUCUAUUGCAGUUUGUUGUAAAAAAAGAU
.......(((..........(((.((((.((((((((((((((.......))))..)))))))))))))).))).........)))............ (-24.76 = -24.79 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:14 2006