Locus 2683

Sequence ID 3R_DroMel_CAF1
Location 7,218,235 – 7,218,346
Length 111
Max. P 0.685677
window4355

overview

Window 5

Location 7,218,235 – 7,218,346
Length 111
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 78.58
Mean single sequence MFE -21.45
Consensus MFE -14.70
Energy contribution -15.70
Covariance contribution 1.00
Combinations/Pair 1.21
Mean z-score -1.30
Structure conservation index 0.69
SVM decision value 0.32
SVM RNA-class probability 0.685677
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7218235 111 - 27905053
ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUCGGCCCACUGGAUUUGUAUAUCCGUGGCCCACAUGCUUCUUUUUUCUU-------GUCGCUCUUU
........((((((((((((((........).))))))))))))).((......((((.((.((((......)))))))))).....))............-------.......... ( -22.20)
>DroSec_CAF1 50135 102 - 1
ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUCGGCCCACUGGAUUUGUAUAUCCGUGG--------CUUCAU-AUUCUU-------GUCACUCUUU
........((((((((((((((........).))))))))))))).........((((.((.((((......))))))))--------))....-......-------.......... ( -18.70)
>DroSim_CAF1 46791 110 - 1
ACAUUAUUAGAUUAAAACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUCGGCCCACUGGAUUUGUAUAUCCGUGGCCCACAUGCUUCAU-AUUCUU-------GUCACUCUUU
........((((((((((((((........).))))))))))))).((......((((.((.((((......)))))))))).....)).....-......-------.......... ( -22.10)
>DroEre_CAF1 55249 110 - 1
ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUUGGCCCACUGGAUUUGGAUAUCCGUGGCCCACAUGCUUCAU-GUUCUU-------GUCGCUUUUU
........((((((((((((((........).))))))))))))).((.(((..((.((((.((((......)))))))).))(((((...)))-))..))-------)..))..... ( -24.90)
>DroYak_CAF1 55559 110 - 1
ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUUGGCCCACCGGAUUUGCAUAUCCGUGGCCCACAUGCUUCAU-CUUCUU-------GUCGCUCUUU
........((((((((((((((........).)))))))))))))........(((.((((.((((......)))))))).)))...((..((.-.....)-------)..))..... ( -24.30)
>DroPer_CAF1 88221 98 - 1
ACAU---AAGAUUAAGAUUUUAGGUUU--UUUUUAGUUUUGGUUUUA----------GCAUUGGAUGCGA----UCGAAGCUCGCAUCUCUCAU-CCUCUUCUUCACUCUCUCUUCUU
...(---((((((((((((........--.....)))))))))))))----------.....((((((((----.......)))))))).....-....................... ( -16.52)
>consensus
ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUCGGCCCACUGGAUUUGUAUAUCCGUGGCCCACAUGCUUCAU_AUUCUU_______GUCGCUCUUU
........((((((((((((((........).))))))))))))).........((.((((.((((......)))))))).))................................... (-14.70 = -15.70 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:08 2006